Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   FGL23_RS03745 Genome accession   NZ_LR594049
Coordinates   783053..783892 (+) Length   279 a.a.
NCBI ID   WP_061603693.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC10231     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 778053..788892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL23_RS03720 (NCTC10231_00742) tuf 778922..780118 (+) 1197 WP_060554003.1 elongation factor Tu -
  FGL23_RS03725 (NCTC10231_00743) tpiA 780390..781148 (+) 759 WP_060554002.1 triose-phosphate isomerase -
  FGL23_RS03730 (NCTC10231_00744) - 781276..781509 (+) 234 WP_037622338.1 DUF1146 family protein -
  FGL23_RS03735 (NCTC10231_00745) murA 781547..782827 (+) 1281 WP_012000226.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  FGL23_RS03740 (NCTC10231_00746) - 782820..783008 (+) 189 WP_020992673.1 DNA-directed RNA polymerase subunit beta -
  FGL23_RS03745 (NCTC10231_00747) endA 783053..783892 (+) 840 WP_061603693.1 DNA/RNA non-specific endonuclease Machinery gene
  FGL23_RS03750 (NCTC10231_00748) - 784108..784809 (-) 702 WP_061603694.1 alpha/beta hydrolase -
  FGL23_RS03755 (NCTC10231_00749) - 784790..785818 (-) 1029 WP_061603695.1 ABC transporter substrate-binding protein -
  FGL23_RS03760 (NCTC10231_00750) - 785874..786629 (-) 756 WP_061603696.1 ABC transporter ATP-binding protein -
  FGL23_RS03765 (NCTC10231_00751) - 786631..787677 (-) 1047 WP_061603697.1 FecCD family ABC transporter permease -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30821.51 Da        Isoelectric Point: 9.9639

>NTDB_id=1127961 FGL23_RS03745 WP_061603693.1 783053..783892(+) (endA) [Streptococcus gordonii strain NCTC10231]
MKKKQEEKLFQSIVGLILALVLIAGANYLSNHQNQDNIKSNPQVQRTGRRDISTPEQALSQSVLTDSVRKQLKGSIEWNQ
AGAYIINGNKTDLNADIASQPYAQNQTKSVQGQLVPIIGNALLSKQTRQYKNREETGNGTTSWVPAGWHQVRNLSGDFNH
AVDRGHLLAYSLVGGLKNFDASTSNPENIAVQTAWANQANSPSSTGQNFYESLIRKALDKKKRVRYRVTLIYANPDDLIA
VGSHLEAKSSDGSLEFNVFVPNIQTGIRINYRTGEVTVE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=1127961 FGL23_RS03745 WP_061603693.1 783053..783892(+) (endA) [Streptococcus gordonii strain NCTC10231]
ATGAAGAAGAAACAAGAAGAGAAACTCTTTCAAAGCATAGTCGGACTGATTCTGGCACTTGTTCTGATAGCTGGTGCTAA
TTATTTATCAAACCATCAGAATCAGGATAACATAAAGTCTAATCCACAGGTTCAAAGAACAGGAAGAAGGGATATCTCAA
CTCCCGAGCAAGCACTATCTCAGAGTGTATTGACTGATTCTGTTCGCAAGCAATTAAAAGGCAGCATTGAATGGAATCAG
GCAGGTGCTTATATTATTAATGGCAACAAGACAGACCTAAATGCTGATATTGCCAGTCAGCCTTATGCACAAAATCAGAC
AAAGTCAGTTCAGGGACAGTTAGTACCAATAATTGGGAATGCTCTGCTTTCTAAACAGACTAGACAATACAAAAATCGAG
AAGAAACCGGAAACGGAACGACAAGTTGGGTTCCCGCCGGCTGGCATCAAGTGAGAAATCTTAGTGGAGATTTTAATCAT
GCAGTTGATCGAGGGCATTTATTAGCATATTCTTTAGTTGGAGGCTTAAAGAACTTCGATGCTTCTACAAGTAACCCAGA
GAATATCGCTGTCCAAACAGCTTGGGCAAATCAGGCAAACAGTCCTTCATCTACTGGGCAAAATTTTTATGAAAGCTTGA
TTCGGAAGGCTTTGGATAAAAAGAAGCGAGTTCGTTATCGGGTAACCTTGATTTATGCTAATCCTGATGACTTGATAGCA
GTAGGCTCTCATTTGGAAGCAAAGTCTAGCGATGGAAGTCTTGAGTTTAATGTCTTCGTTCCGAATATTCAAACCGGGAT
TCGTATCAATTACAGAACTGGGGAAGTGACAGTAGAGTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(84-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

68.304

80.287

0.548
  endA Streptococcus pneumoniae D39

68.304

80.287

0.548
  endA Streptococcus pneumoniae R6

68.304

80.287

0.548
  endA Streptococcus pneumoniae TIGR4

68.304

80.287

0.548

Multiple sequence alignment