Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   FGL18_RS03960 Genome accession   NZ_LR594046
Coordinates   782066..782932 (+) Length   288 a.a.
NCBI ID   WP_138125274.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain NCTC6403     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 777066..787932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL18_RS03935 (NCTC6403_00809) atpD 778102..779508 (+) 1407 WP_003057452.1 F0F1 ATP synthase subunit beta -
  FGL18_RS03940 (NCTC6403_00810) - 779521..779937 (+) 417 WP_003050138.1 F0F1 ATP synthase subunit epsilon -
  FGL18_RS03945 (NCTC6403_00811) - 780266..780502 (+) 237 WP_277997757.1 DUF1146 family protein -
  FGL18_RS03950 (NCTC6403_00812) murA 780567..781838 (+) 1272 WP_129555870.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  FGL18_RS03955 (NCTC6403_00813) - 781842..782030 (+) 189 WP_003050141.1 DNA-directed RNA polymerase subunit beta -
  FGL18_RS03960 (NCTC6403_00814) endA 782066..782932 (+) 867 WP_138125274.1 DNA/RNA non-specific endonuclease Machinery gene
  FGL18_RS03965 (NCTC6403_00815) pheS 783215..784258 (+) 1044 WP_129555869.1 phenylalanine--tRNA ligase subunit alpha -
  FGL18_RS03970 (NCTC6403_00816) pheT 784468..786873 (+) 2406 WP_138125276.1 phenylalanine--tRNA ligase subunit beta -
  FGL18_RS03975 (NCTC6403_00817) - 786986..787363 (+) 378 WP_138125278.1 OsmC family protein -
  FGL18_RS03980 (NCTC6403_00818) - 787356..787742 (+) 387 WP_138125280.1 DUF1722 domain-containing protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31933.93 Da        Isoelectric Point: 10.0750

>NTDB_id=1127801 FGL18_RS03960 WP_138125274.1 782066..782932(+) (endA) [Streptococcus dysgalactiae strain NCTC6403]
MLTRKKRKRVLNSFLLILLVLGSSYLAKSDFIASNHPIKQTYRTILGDKGESSSESKEVYSEVPTEALSASVLTKTIKEQ
LGSDIEWNGAGAYIINRNKTDLNASVASLPYANNETKWVQGQKVPTRANALLTKSTRQYRNRYQTDNAYRTFKPAGWHQL
HHLKGNYDHAVDRGHLLGYALVGGLKGFDASTSNPDNIATQLSWANQADKPYSTGQNYYEGLVRRALDKGKRVRYRVTLL
YDGDNLLASGSQLEAKSADGSLAFNVFVPNVQAGLTVDYRTGQIAINP

Nucleotide


Download         Length: 867 bp        

>NTDB_id=1127801 FGL18_RS03960 WP_138125274.1 782066..782932(+) (endA) [Streptococcus dysgalactiae strain NCTC6403]
ATGTTAACAAGGAAAAAACGAAAAAGGGTGCTTAATTCCTTCTTATTGATTTTGTTAGTGTTGGGGTCTAGTTACCTTGC
TAAGAGTGATTTCATAGCTAGCAATCACCCTATTAAGCAAACTTATCGTACCATTTTGGGAGATAAGGGTGAATCATCAT
CAGAATCAAAAGAAGTCTATAGTGAGGTTCCCACAGAAGCCCTATCGGCTTCTGTCTTGACCAAAACCATTAAGGAACAA
TTAGGTTCCGATATTGAATGGAATGGAGCAGGCGCTTATATTATCAACAGGAACAAAACAGATTTAAACGCAAGCGTAGC
CAGTCTGCCCTATGCCAATAATGAAACCAAATGGGTCCAAGGACAAAAGGTTCCTACTAGAGCTAATGCCTTACTTACTA
AGTCGACACGACAGTATCGAAATCGCTATCAAACGGACAATGCTTATCGTACCTTCAAGCCTGCTGGTTGGCACCAATTA
CATCACTTAAAAGGAAATTATGACCACGCAGTTGATAGAGGACATTTGCTAGGTTATGCTTTAGTTGGTGGACTGAAAGG
TTTTGATGCTTCTACCAGTAATCCTGATAATATTGCCACTCAACTAAGTTGGGCTAATCAAGCAGATAAACCCTATTCGA
CAGGTCAAAATTACTATGAAGGATTAGTACGTCGTGCATTGGATAAGGGGAAAAGGGTACGTTATCGTGTTACCTTGCTT
TATGATGGTGATAACCTGTTAGCCAGTGGTAGCCAGTTAGAGGCCAAATCTGCCGATGGGAGTTTAGCATTTAACGTGTT
TGTTCCAAATGTTCAAGCAGGGCTGACGGTTGATTATCGAACAGGACAGATTGCTATCAATCCCTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(121-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

62.338

80.208

0.5
  endA Streptococcus pneumoniae D39

62.338

80.208

0.5
  endA Streptococcus pneumoniae R6

62.338

80.208

0.5
  endA Streptococcus pneumoniae TIGR4

62.338

80.208

0.5

Multiple sequence alignment