Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   FGL16_RS05910 Genome accession   NZ_LR594043
Coordinates   1117946..1118785 (-) Length   279 a.a.
NCBI ID   WP_014735752.1    Uniprot ID   -
Organism   Streptococcus suis strain NCTC10237     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1112946..1123785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL16_RS05895 (NCTC10237_01159) uidA 1113307..1115106 (-) 1800 WP_014735755.1 beta-glucuronidase -
  FGL16_RS05900 (NCTC10237_01160) - 1115122..1116150 (-) 1029 WP_014735754.1 sugar kinase -
  FGL16_RS05905 (NCTC10237_01161) - 1116206..1117759 (-) 1554 WP_014735753.1 MFS transporter -
  FGL16_RS05910 (NCTC10237_01162) endA 1117946..1118785 (-) 840 WP_014735752.1 DNA/RNA non-specific endonuclease Machinery gene
  FGL16_RS05915 (NCTC10237_01163) - 1118815..1119006 (-) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  FGL16_RS05920 (NCTC10237_01164) murA 1118999..1120282 (-) 1284 WP_014735751.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  FGL16_RS05925 - 1120306..1120530 (-) 225 WP_024387485.1 DUF1146 family protein -
  FGL16_RS05930 (NCTC10237_01165) - 1120590..1121006 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  FGL16_RS05935 (NCTC10237_01166) atpD 1121016..1122422 (-) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  FGL16_RS05940 (NCTC10237_01167) - 1122442..1123320 (-) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30159.40 Da        Isoelectric Point: 6.2370

>NTDB_id=1127636 FGL16_RS05910 WP_014735752.1 1117946..1118785(-) (endA) [Streptococcus suis strain NCTC10237]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASEGTPSQELASSVLIEDVKKQLGNSIEWNSA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWAPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLTINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=1127636 FGL16_RS05910 WP_014735752.1 1117946..1118785(-) (endA) [Streptococcus suis strain NCTC10237]
ATGGCGAAGAAAAATGTAAAAAAACAAGCGATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTGGCGGGGGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCGAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGATAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATAGCGCT
GGAGCATTTATTATTAACGGTAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
GACAGTCCAGGGAGAGACGGTTCCAACAGTAGCCAATGCGCTTTTAGCTAAATCTACACGTCAGTATAAGGATCGTGAAG
AAACAGGAAATGGTCGAACTTCTTGGGCACCTGCGGGTTGGCATCAAATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAAAATTATTTTGAAAGTCAGATTC
GGCGTGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCTTAGAGTTCAATGTGTTCGTTCCAAATGTTCAGAGCGGTCTCAC
TATCAATTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.068

84.588

0.584
  endA Streptococcus pneumoniae D39

69.068

84.588

0.584
  endA Streptococcus pneumoniae R6

69.068

84.588

0.584
  endA Streptococcus pneumoniae TIGR4

69.068

84.588

0.584

Multiple sequence alignment