Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGH   Type   Machinery gene
Locus tag   LG36_RS10305 Genome accession   NZ_CP009472
Coordinates   2144614..2145552 (-) Length   312 a.a.
NCBI ID   WP_038602246.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2139614..2150552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS10280 (LG36_1962) frr 2139817..2140374 (-) 558 WP_004254618.1 ribosome recycling factor -
  LG36_RS10285 (LG36_1963) pyrH 2140536..2141252 (-) 717 WP_021464089.1 UMP kinase -
  LG36_RS10290 (LG36_1964) - 2141337..2141789 (-) 453 WP_038602950.1 hypothetical protein -
  LG36_RS10295 (LG36_1965) - 2141887..2143074 (-) 1188 WP_015427114.1 acetate kinase -
  LG36_RS10300 (LG36_1966) - 2143231..2144418 (-) 1188 WP_004254593.1 acetate kinase -
  LG36_RS10305 (LG36_1967) comGH 2144614..2145552 (-) 939 WP_038602246.1 class I SAM-dependent methyltransferase Machinery gene
  LG36_RS10310 (LG36_1968) - 2145640..2145891 (-) 252 WP_038602250.1 DUF3165 family protein -
  LG36_RS10315 (LG36_1969) typA 2145992..2147824 (-) 1833 WP_021723473.1 translational GTPase TypA -
  LG36_RS12330 (LG36_1970) - 2148012..2148470 (-) 459 WP_038602253.1 hypothetical protein -
  LG36_RS10325 (LG36_1971) - 2148472..2148882 (-) 411 WP_235589867.1 hypothetical protein -
  LG36_RS10330 (LG36_1972) - 2148889..2149515 (-) 627 WP_033900782.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34812.97 Da        Isoelectric Point: 4.3760

>NTDB_id=112760 LG36_RS10305 WP_038602246.1 2144614..2145552(-) (comGH) [Lactococcus lactis strain AI06]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAAFLDDTDQGIVELSVNNDKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNAEAKAIYVLKKGPAAHATFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=112760 LG36_RS10305 WP_038602246.1 2144614..2145552(-) (comGH) [Lactococcus lactis strain AI06]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGATCAAGGAATTGTTGAATTGTCAGTAAATA
ATGACAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGTATGGGTAATCTTGCTGAAACGCTTTTGGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCTGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCAGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGGAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGAGGCTAAGGCGATTTATGTTTTGAAAAAGGGACCGGCTGCACATGCAACTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGH Streptococcus mutans UA140

48.882

100

0.49
  comGH Streptococcus mutans UA159

48.562

100

0.487

Multiple sequence alignment