Detailed information NTG0112744

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: LG36_RS08840
• Genome accession: NZ_CP009472
• Coordinates: 1856728..1859232 (-)
• Length: 834 a.a.
• NCBI ID: WP_038601750.1
• Uniprot ID: -
• Organism: Lactococcus lactis strain AI06
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1851728..1864232

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LG36_RS08815 (LG36_1689)	-	1852905..1853588 (+)	684	WP_038601744.1	lactate utilization protein C	-
LG36_RS08820 (LG36_1690)	-	1853662..1854375 (-)	714	WP_080739876.1	Bax inhibitor-1/YccA family protein	-
LG36_RS08825 (LG36_1691)	-	1854492..1855403 (-)	912	WP_038601746.1	diacylglycerol kinase family protein	-
LG36_RS08830 (LG36_1692)	-	1855558..1856070 (-)	513	WP_003132795.1	HD domain-containing protein	-
LG36_RS08835 (LG36_1693)	rpsT	1856402..1856635 (+)	234	WP_038601748.1	30S ribosomal protein S20	-
LG36_RS08840 (LG36_1694)	recD/recD2/recDB	1856728..1859232 (-)	2505	WP_038601750.1	ATP-dependent RecD-like DNA helicase	Machinery gene
LG36_RS08845 (LG36_1695)	-	1859229..1859822 (-)	594	WP_038601752.1	histidine phosphatase family protein	-
LG36_RS08850 (LG36_1696)	pheA	1859825..1860664 (-)	840	WP_038601754.1	prephenate dehydratase	-
LG36_RS08855 (LG36_1697)	-	1860666..1861154 (-)	489	WP_038601758.1	shikimate kinase	-
LG36_RS08860 (LG36_1698)	aroA	1861178..1862470 (-)	1293	WP_038601761.1	3-phosphoshikimate 1-carboxyvinyltransferase	-
LG36_RS08865 (LG36_1699)	-	1862591..1863655 (-)	1065	WP_038601764.1	prephenate dehydrogenase	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 93017.40 Da
• Isoelectric Point: 4.5083

>NTDB_id=112744 LG36_RS08840 WP_038601750.1 1856728..1859232(-) (recD/recD2/recDB) [Lactococcus lactis strain AI06]
MIEKTYFTGSIEAIFFSNPSNFYKVLLIEIDETNAEYDDFEIVVNGTIGDVVEGDSYTFYGQLTQHPKYGEQLQVSQYEK
AVPTSGAGLVKYFSSDKFPGIGKKTAEKIVETFPENTVDSILEAPEKLDGLLTLARKNSFIKRLRENHGMEKVLTKLAEY
GLPSKITFQIYELYKEETIEKIEENPYQLVEDVKGVGFKTADKIASSLGIEADSPNRFRAALMHEVNTHSQSTGDTYIEA
KNLLEMTIDLLEEARNVEVNPSAVAEEINGLIVDGKVQQEGTKIFENSLYFAEDGIRKSLTALTNRSGKDFADEKLLTVL
AEVEKDLEITYDDLQKQAIIGAMNQQFFILTGGPGTGKTTIINGFIETYARLHQLDLDPDHYNDDVFPILLAAPTGRASR
RMNELTGLPAATIHRHLGLGQDEAEDALGNELSGALLIVDEFSMVDTWLANKLFQAIPGSMKVLLVGDADQLPSVGPGQI
FADLLKIPEIPSVKLDKIFRQGDDSTITDLAHHIKDGQLPSDFTAKKPDRSYFEVSANFVPQMVEQIASAWQKRGNNPFE
LQILAPMYKGMAGINAMNVLLQNLFNPLNDRLEFALGDMKFREGDKVLHLVNDAEANVFNGDLGQIVELIAAKYTDSKQD
ELVMDFDGQELTYPRAEWYKITLAYAMSIHKSQGSEFSTVIVPMVSSYSRMLERNLLYTAITRAKQSLILLGEERAFAQA
VAREGANRKTYLIERFMGENPADKNLSVEIVSEKVTDKKERSNKEKKLATPVELQGQNHSVSKKMPAKVEEISLFEDEEI
ETLDQGSLTEALILSGNFDPLIGLTQQDFAIFNK

Nucleotide

• Length: 2505 bp

>NTDB_id=112744 LG36_RS08840 WP_038601750.1 1856728..1859232(-) (recD/recD2/recDB) [Lactococcus lactis strain AI06]
ATGATTGAAAAAACTTATTTTACTGGTTCGATTGAGGCAATATTTTTCTCCAATCCCAGTAATTTTTATAAAGTTCTACT
CATTGAAATTGATGAAACTAATGCTGAATATGATGATTTTGAAATTGTGGTTAACGGGACAATTGGGGATGTGGTTGAAG
GAGATTCTTATACATTTTATGGTCAATTGACGCAGCATCCTAAGTATGGGGAACAATTACAGGTCAGTCAATATGAAAAA
GCAGTGCCGACTTCTGGTGCTGGTTTAGTTAAATATTTTTCTTCAGATAAATTTCCTGGAATTGGTAAGAAAACGGCAGA
AAAAATTGTTGAAACTTTTCCTGAAAATACGGTAGATTCAATTTTAGAAGCGCCGGAAAAATTGGATGGTCTATTGACCC
TAGCCAGAAAAAATTCATTTATCAAACGATTACGTGAGAACCATGGAATGGAAAAAGTGCTGACCAAGCTTGCAGAATAC
GGCTTACCAAGCAAAATCACTTTTCAAATTTATGAACTTTATAAAGAAGAAACGATTGAAAAAATTGAGGAAAATCCTTA
TCAACTTGTGGAAGATGTTAAGGGAGTTGGTTTTAAAACAGCTGATAAGATTGCAAGTAGTTTAGGAATTGAAGCGGATA
GCCCTAATCGATTTCGAGCGGCATTGATGCATGAGGTCAATACGCATTCGCAATCAACAGGTGATACTTACATTGAAGCC
AAAAATTTACTTGAGATGACGATAGATTTACTTGAAGAAGCTCGTAATGTCGAGGTCAATCCGTCTGCTGTTGCGGAGGA
AATTAATGGTTTAATTGTTGATGGAAAAGTGCAACAAGAAGGAACAAAAATATTTGAGAATTCTTTGTACTTTGCTGAGG
ACGGGATTCGGAAATCACTGACAGCATTAACTAATCGTTCTGGTAAAGATTTTGCTGATGAAAAGTTACTGACAGTTTTG
GCTGAAGTTGAAAAAGATTTAGAAATTACTTATGATGATTTGCAAAAGCAAGCCATTATTGGTGCAATGAATCAGCAATT
TTTCATTTTGACTGGTGGACCAGGAACTGGTAAAACAACAATTATTAATGGTTTTATTGAAACTTATGCCCGTCTTCACC
AGCTAGATTTGGACCCAGACCATTATAATGATGATGTCTTTCCTATATTACTGGCAGCACCGACTGGTCGGGCTTCAAGA
CGGATGAATGAGTTGACTGGTCTTCCAGCAGCAACGATTCACCGCCATTTGGGTTTGGGACAAGATGAAGCAGAAGATGC
TCTTGGAAATGAATTGTCTGGTGCTCTTTTGATTGTTGACGAATTTTCTATGGTTGATACTTGGTTAGCTAATAAACTTT
TTCAAGCGATTCCTGGTTCAATGAAAGTTCTCCTTGTTGGAGATGCTGACCAGCTTCCTTCTGTGGGGCCAGGACAAATT
TTTGCGGATTTACTAAAAATTCCAGAAATTCCGTCAGTAAAATTGGATAAAATTTTTCGTCAAGGGGATGATTCTACCAT
TACTGATTTAGCTCACCATATCAAAGATGGGCAATTGCCAAGTGATTTCACGGCGAAAAAGCCTGACCGTTCATATTTTG
AGGTCAGTGCTAATTTTGTTCCTCAGATGGTTGAACAAATCGCAAGTGCATGGCAAAAAAGAGGGAATAATCCTTTTGAA
TTACAGATCTTAGCGCCTATGTATAAAGGAATGGCCGGAATTAATGCAATGAATGTTCTTTTACAAAATCTCTTTAACCC
ACTTAATGACCGACTTGAATTCGCTTTGGGTGATATGAAATTTCGTGAAGGAGATAAAGTTCTTCATTTAGTAAATGATG
CTGAGGCCAATGTATTTAACGGAGATTTGGGACAAATCGTAGAATTGATTGCAGCAAAATATACTGACAGTAAACAAGAT
GAGTTGGTGATGGATTTTGATGGTCAAGAATTGACTTATCCAAGAGCGGAGTGGTATAAAATTACTCTGGCTTATGCTAT
GTCCATTCATAAATCTCAAGGTTCAGAGTTTTCCACAGTTATTGTGCCGATGGTTTCTTCGTATTCACGCATGTTAGAGC
GAAATTTGCTTTATACGGCAATTACAAGGGCTAAACAAAGTCTGATTTTACTTGGTGAAGAACGAGCTTTTGCACAAGCG
GTGGCGCGTGAAGGGGCGAATCGAAAGACCTATCTGATCGAGCGATTTATGGGAGAAAACCCAGCGGATAAAAATCTGTC
AGTAGAAATTGTGAGTGAAAAAGTTACTGACAAAAAAGAAAGATCTAACAAAGAGAAGAAGCTTGCAACGCCAGTAGAAT
TACAAGGGCAAAATCATTCTGTCAGTAAAAAAATGCCAGCAAAAGTAGAAGAAATTTCTTTATTTGAAGATGAAGAAATT
GAAACACTGGATCAGGGAAGCTTGACAGAAGCACTTATTTTGTCAGGAAATTTTGACCCTTTAATTGGTTTAACTCAACA
AGACTTTGCAATCTTTAATAAATAA

Domains

Predicted by InterProScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (577-646)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (664-710)

• Helix-hairpin-helix containing domain (HHH_RecD2) (146-237)

• AAA domain (AAA_30) (331-522)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	42.175	90.408	0.381