Detailed information NTG1127373

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: FGK96_RS09425
• Genome accession: NZ_LR594036
• Coordinates: 1946115..1947050 (-)
• Length: 311 a.a.
• NCBI ID: WP_138083302.1
• Uniprot ID: -
• Organism: Streptococcus porcinus strain NCTC10710
• Function: internalize XIP (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	1944706..1946027	1946115..1947050	flank	88

Gene organization within MGE regions

Location: 1944706..1947050

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FGK96_RS09420	-	1944706..1946027 (+)	1322	WP_138083301.1	IS3 family transposase	-
FGK96_RS09425 (NCTC10710_01949)	amiF	1946115..1947050 (-)	936	WP_138083302.1	ABC transporter ATP-binding protein	Regulator

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35349.34 Da
• Isoelectric Point: 6.7828

>NTDB_id=1127373 FGK96_RS09425 WP_138083302.1 1946115..1947050(-) (amiF) [Streptococcus porcinus strain NCTC10710]
MTDKRKKLVELKNVSLIFNKGKKNEVKAIDNISFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINEGEIIFNGKTVSNL
KAKELHEFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHKLSPNKVEREKRVQELLERVGLNRDHATRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQRLQEERGLTYLFIAHDLSMVKYISDRIGVMHWGKLLEIGTSDD
VYNNPIHPYTRSLLSAIPEPDPDVERQRVAEIYDPSIEMDGQERQMHEITPGHFVLSTEAEAEAYRSQQNK

Nucleotide

• Length: 936 bp

>NTDB_id=1127373 FGK96_RS09425 WP_138083302.1 1946115..1947050(-) (amiF) [Streptococcus porcinus strain NCTC10710]
ATGACAGACAAACGCAAAAAATTAGTTGAGCTTAAGAATGTTTCACTGATCTTCAATAAAGGTAAAAAGAATGAAGTTAA
GGCTATTGACAATATCAGTTTCGATATCTACGAAGGTGAAGTTTTTGGTCTTGTCGGAGAATCCGGATCAGGAAAAACGA
CAGTCGGCCGTGCTATTTTGAAGCTTTATGATATCAATGAAGGCGAGATCATCTTTAATGGCAAAACGGTTTCCAATCTT
AAAGCTAAAGAGTTACATGAGTTCCGTAAAGATGCCCAGATGATTTTCCAAGATCCGCAAGCTAGTCTTAATGGTCGGAT
GAAAATTAGAGATATTGTTGCAGAAGGTCTAGATATTCATAAACTTTCACCAAACAAAGTAGAACGTGAGAAACGAGTTC
AAGAATTGCTAGAACGTGTTGGGTTGAACCGTGACCATGCAACACGTTATCCCCATGAATTTTCTGGCGGTCAACGCCAA
CGTATTGGTATTGCAAGAGCGCTAGCTGTCAAACCGAAATTCATAATTGCTGATGAACCTATCTCTGCTCTCGACGTATC
TATTCAAGCACAGGTTGTTAACTTAATGCAAAGATTACAAGAAGAAAGAGGATTGACTTATCTCTTTATTGCACATGATT
TGTCAATGGTTAAATATATTTCCGATCGTATTGGTGTTATGCATTGGGGTAAATTGTTAGAGATTGGTACGTCTGATGAT
GTTTATAATAATCCTATCCACCCCTACACTAGGAGTCTCCTCTCCGCTATTCCAGAGCCAGATCCAGATGTTGAGCGCCA
ACGTGTTGCTGAAATCTACGATCCAAGTATCGAAATGGATGGACAAGAACGCCAAATGCATGAAATTACGCCAGGTCACT
TTGTTTTATCGACCGAAGCAGAAGCAGAAGCATATAGATCTCAACAAAATAAATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	53.896	99.035	0.534
amiF	Streptococcus thermophilus LMG 18311	53.571	99.035	0.531
amiF	Streptococcus salivarius strain HSISS4	53.247	99.035	0.527