Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   FGK99_RS04010 Genome accession   NZ_LR594033
Coordinates   857358..858236 (+) Length   292 a.a.
NCBI ID   WP_138119110.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC4675     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 852358..863236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK99_RS03980 (NCTC4675_00806) - 852551..853426 (+) 876 WP_012515431.1 F0F1 ATP synthase subunit gamma -
  FGK99_RS03985 (NCTC4675_00807) atpD 853594..855000 (+) 1407 WP_012515432.1 F0F1 ATP synthase subunit beta -
  FGK99_RS03990 (NCTC4675_00808) - 855013..855429 (+) 417 WP_012515433.1 F0F1 ATP synthase subunit epsilon -
  FGK99_RS03995 (NCTC4675_00809) - 855563..855799 (+) 237 WP_012678109.1 DUF1146 family protein -
  FGK99_RS04000 (NCTC4675_00810) murA 855863..857134 (+) 1272 WP_038674827.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  FGK99_RS04005 (NCTC4675_00811) - 857138..857326 (+) 189 WP_041785421.1 DNA-directed RNA polymerase subunit beta -
  FGK99_RS04010 (NCTC4675_00812) endA 857358..858236 (+) 879 WP_138119110.1 DNA/RNA non-specific endonuclease Machinery gene
  FGK99_RS10105 - 858250..858408 (+) 159 WP_014622728.1 hypothetical protein -
  FGK99_RS04015 (NCTC4675_00813) pheS 859146..860189 (+) 1044 WP_012678105.1 phenylalanine--tRNA ligase subunit alpha -
  FGK99_RS04020 (NCTC4675_00814) pheT 860379..862784 (+) 2406 WP_138119112.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 31856.90 Da        Isoelectric Point: 10.1657

>NTDB_id=1127176 FGK99_RS04010 WP_138119110.1 857358..858236(+) (endA) [Streptococcus equi subsp. zooepidemicus strain NCTC4675]
MIKKKKDIRLLNAFLALLLVLGTGYLAGHDDLAADNPIKQVYQRIFGSDPQQAESPKASRDWDTPSKALADSVMTAAIKQ
QLGDVITWNGTGAYIINHNKTTLNAKVASLPYANNKTKMVQGQSVPTVANALLTKSTRQYQKRNDTGNGYSSWKPAGWHQ
VQGLKGRYSHAVDRGHLLGYALVGGLKGFDASMANPSNIATQTAWANQAANERSTGQNYYETKIRKALDSNKRVRYRVTL
LYEGNNLLASGSHLEAKSSDGSLEFNVFIPNVQAGLQIDYQTGQITVASSQP

Nucleotide


Download         Length: 879 bp        

>NTDB_id=1127176 FGK99_RS04010 WP_138119110.1 857358..858236(+) (endA) [Streptococcus equi subsp. zooepidemicus strain NCTC4675]
ATGATCAAAAAGAAGAAAGACATTAGGCTGCTTAATGCCTTTTTAGCGCTCTTGCTTGTTCTTGGAACAGGTTATTTGGC
AGGACATGATGACCTGGCAGCTGATAATCCGATCAAGCAGGTCTACCAAAGGATTTTTGGCTCTGACCCGCAGCAAGCCG
AGTCACCAAAGGCAAGCAGAGACTGGGACACTCCCTCCAAGGCCTTGGCGGATTCGGTCATGACAGCTGCCATCAAACAG
CAATTAGGTGATGTGATTACTTGGAATGGCACCGGTGCCTATATTATTAACCATAATAAAACGACGCTAAATGCAAAGGT
AGCTAGTCTCCCCTATGCCAATAATAAAACAAAGATGGTACAAGGGCAAAGCGTTCCTACCGTAGCCAATGCCCTGCTAA
CCAAGTCAACCCGACAATATCAGAAGCGCAATGACACTGGAAATGGCTATAGCTCATGGAAGCCTGCTGGCTGGCATCAG
GTTCAGGGGTTAAAGGGAAGGTATAGTCACGCAGTGGATAGAGGGCATCTTCTAGGCTATGCGCTTGTTGGCGGGCTAAA
AGGCTTTGATGCCTCAATGGCTAATCCTAGTAATATCGCTACTCAAACCGCATGGGCTAACCAAGCAGCTAACGAGAGAT
CAACCGGACAAAACTATTATGAAACAAAAATTCGCAAAGCCCTAGATAGCAATAAGCGTGTCCGCTATCGTGTAACTTTG
CTTTATGAGGGAAATAATCTCTTAGCAAGCGGCAGTCATCTTGAGGCAAAGTCATCAGATGGTAGCTTAGAATTTAACGT
CTTTATCCCTAATGTACAGGCTGGATTACAGATTGATTATCAAACAGGTCAGATCACTGTAGCTTCTTCCCAGCCTTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(97-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

68.142

77.397

0.527
  endA Streptococcus pneumoniae D39

68.142

77.397

0.527
  endA Streptococcus pneumoniae R6

68.142

77.397

0.527
  endA Streptococcus pneumoniae TIGR4

68.142

77.397

0.527

Multiple sequence alignment