Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LG36_RS01320 Genome accession   NZ_CP009472
Coordinates   261680..263557 (+) Length   625 a.a.
NCBI ID   WP_038598869.1    Uniprot ID   -
Organism   Lactococcus lactis strain AI06     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 256680..268557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS01300 (LG36_0239) - 256879..258153 (-) 1275 WP_038598857.1 NAD(P)/FAD-dependent oxidoreductase -
  LG36_RS01305 (LG36_0240) - 258295..259122 (+) 828 WP_038598860.1 NAD(P)H-hydrate dehydratase -
  LG36_RS01310 (LG36_0241) - 259274..259687 (+) 414 WP_038598863.1 DUF1398 domain-containing protein -
  LG36_RS01315 (LG36_0242) - 259848..261683 (+) 1836 WP_038598866.1 ABC transporter ATP-binding protein -
  LG36_RS01320 (LG36_0243) rcrQ 261680..263557 (+) 1878 WP_038598869.1 ABC transporter ATP-binding protein Regulator
  LG36_RS01325 (LG36_0244) - 263656..264309 (+) 654 WP_038598871.1 YcjF family protein -
  LG36_RS01330 (LG36_0245) - 264355..265374 (-) 1020 WP_038598874.1 Gfo/Idh/MocA family oxidoreductase -
  LG36_RS12035 (LG36_0246) - 265358..265525 (-) 168 WP_003131184.1 hypothetical protein -
  LG36_RS01335 (LG36_0247) - 265714..266190 (-) 477 WP_003131187.1 S-ribosylhomocysteine lyase -
  LG36_RS01340 (LG36_0248) - 266404..266868 (+) 465 WP_038598881.1 GyrI-like domain-containing protein -
  LG36_RS01345 (LG36_0249) - 266933..267778 (+) 846 WP_038598884.1 aldo/keto reductase -
  LG36_RS01350 (LG36_0250) - 267944..268456 (+) 513 WP_038598887.1 cysteine hydrolase family protein -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 70324.13 Da        Isoelectric Point: 8.2098

>NTDB_id=112700 LG36_RS01320 WP_038598869.1 261680..263557(+) (rcrQ) [Lactococcus lactis strain AI06]
MMRGNYLNRGGKGADRFQKGRRAQNFFPTIIRLFKYMRRDLWGLLFSILIASLSVILSVQAPKILGNATTVIFDGVTKSL
KNHTAIQIDMAKVESILLYVMVIYLISFISGILQQSIMTRISQRTVYTLRREFKNKMKKLPVSYYDSHSHGDIMSRMIND
MDNISGTLNQTLIQLITSLLQFVGTIYFMLTISWQLALVAFITVPLAMITVRIVAPLSQKFFAEQQKNLGLLNDQIEENY
AGHTVIKTFNHEASAEKEFAKRNDSFYKSAWKAQFVSTLIYPTMRFINNLDYLAMAVIGGLKVISGTVNLGDVQAMLQYT
NQFAQPITNISNMLNTIQATVASAERIFEVLDEKEMTDGIPVSEKVADKSSKNAVSNLEATDKTDFINFDQVAFSYNENQ
SLMTDVNFSVEVGQMIAIVGPTGAGKTTMINLLERFYDVTSGNILLEGKDIREIDREQLRGRMAMVLQETWLFSGTIMDN
LQYGRLEATQEEVIQAAKMAHADEFITTLPQGYQTLLNEAASNISQGQRQLLTIARAFLANPEILILDEATSSVDTRTER
LIQSAMNRLLKGRTSFVVAHRLSTIRDANQILVMENGNIVEMGNHESLLKENGLYASLYNSQFAK

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=112700 LG36_RS01320 WP_038598869.1 261680..263557(+) (rcrQ) [Lactococcus lactis strain AI06]
ATGATGAGAGGAAATTATCTCAATCGAGGTGGCAAAGGGGCTGACCGTTTTCAAAAAGGTCGGCGAGCTCAAAATTTCTT
TCCAACGATTATTCGACTTTTCAAATATATGCGCAGAGATTTATGGGGACTCCTTTTTTCAATTTTAATTGCTTCGCTGT
CAGTCATTTTGTCGGTTCAGGCACCCAAAATTTTGGGAAATGCAACCACAGTGATATTTGATGGCGTAACAAAAAGTCTA
AAAAATCATACCGCAATTCAAATTGACATGGCTAAGGTCGAATCTATTTTGCTTTATGTCATGGTCATTTATCTGATTTC
ATTTATCTCTGGGATTTTGCAACAAAGCATTATGACACGCATTTCGCAACGAACAGTTTATACTTTACGTCGTGAATTTA
AAAACAAAATGAAAAAATTGCCAGTTTCATATTATGATAGCCATAGTCATGGGGATATCATGAGTCGAATGATAAATGAT
ATGGATAATATTTCAGGGACTTTAAATCAAACTTTGATTCAGCTTATCACAAGTCTCTTGCAATTTGTTGGAACTATTTA
TTTCATGTTGACCATCTCTTGGCAGTTGGCACTCGTCGCCTTTATCACAGTTCCTTTGGCAATGATTACGGTAAGGATTG
TTGCACCTTTATCGCAAAAATTCTTTGCTGAACAACAAAAAAATCTGGGATTATTGAATGACCAAATTGAAGAAAATTAT
GCAGGGCATACGGTCATTAAAACATTTAATCATGAAGCCTCAGCTGAAAAAGAATTTGCAAAAAGAAATGATAGTTTTTA
TAAATCAGCTTGGAAAGCTCAATTTGTATCGACTTTGATTTATCCAACCATGCGATTTATCAATAATTTAGATTACTTAG
CCATGGCCGTAATTGGTGGTCTTAAAGTTATTTCAGGGACGGTTAATCTCGGAGATGTTCAAGCCATGTTGCAATATACC
AATCAATTTGCACAGCCAATCACAAATATCTCGAATATGCTTAATACTATTCAGGCTACAGTTGCGTCAGCCGAACGAAT
TTTTGAAGTATTAGATGAAAAAGAAATGACTGACGGAATTCCTGTCAGTGAAAAAGTTGCTGACAAAAGTTCAAAAAATG
CTGTCAGTAATTTAGAAGCGACTGACAAGACTGATTTCATCAATTTTGACCAAGTTGCATTTTCTTACAATGAGAATCAA
TCCTTAATGACAGATGTAAATTTTTCCGTTGAAGTTGGGCAAATGATTGCCATTGTGGGACCAACAGGAGCAGGAAAAAC
AACAATGATTAACTTGCTCGAACGATTTTACGATGTCACTTCGGGAAATATTTTACTTGAGGGAAAAGACATTCGCGAAA
TTGACCGTGAACAATTACGTGGACGGATGGCAATGGTTTTACAAGAAACCTGGTTGTTCTCAGGGACAATTATGGATAAT
TTACAGTATGGTCGTCTTGAAGCAACACAAGAAGAAGTGATTCAAGCAGCTAAAATGGCACATGCTGATGAATTTATCAC
CACTTTACCTCAAGGTTATCAAACCCTTTTGAATGAAGCCGCAAGCAATATTTCTCAGGGTCAAAGGCAGTTATTAACCA
TCGCCCGTGCCTTTTTAGCAAATCCAGAAATATTGATTTTGGATGAAGCCACCTCCAGTGTAGATACAAGAACGGAGCGC
CTGATTCAATCAGCGATGAATCGTTTATTAAAAGGGCGGACAAGCTTTGTTGTTGCTCACCGCTTATCAACTATTCGTGA
TGCCAATCAGATTTTGGTTATGGAAAATGGAAATATTGTGGAAATGGGAAACCATGAAAGTCTCCTTAAAGAAAATGGAT
TATATGCCAGCCTTTATAATTCACAATTTGCAAAATAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(44-326)

ABC transporter (ABC_tran)

(404-552)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.641

94.88

0.386

Multiple sequence alignment