Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   FGK94_RS02250 Genome accession   NZ_LR590471
Coordinates   496947..497825 (-) Length   292 a.a.
NCBI ID   WP_138082907.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC11854     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 491947..502825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK94_RS02240 (NCTC11854_00469) pheT 492396..494801 (-) 2406 WP_043029621.1 phenylalanine--tRNA ligase subunit beta -
  FGK94_RS02245 (NCTC11854_00470) pheS 494991..496034 (-) 1044 WP_012678105.1 phenylalanine--tRNA ligase subunit alpha -
  FGK94_RS10275 - 496775..496933 (-) 159 WP_337660680.1 hypothetical protein -
  FGK94_RS02250 (NCTC11854_00472) endA 496947..497825 (-) 879 WP_138082907.1 DNA/RNA non-specific endonuclease Machinery gene
  FGK94_RS02255 (NCTC11854_00473) - 497857..498045 (-) 189 WP_012678107.1 DNA-directed RNA polymerase subunit beta -
  FGK94_RS02260 (NCTC11854_00474) murA 498049..499320 (-) 1272 WP_012678108.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  FGK94_RS02265 (NCTC11854_00475) - 499384..499620 (-) 237 WP_012678109.1 DUF1146 family protein -
  FGK94_RS02270 (NCTC11854_00476) - 499754..500170 (-) 417 WP_012515433.1 F0F1 ATP synthase subunit epsilon -
  FGK94_RS02275 (NCTC11854_00477) atpD 500183..501589 (-) 1407 WP_012515432.1 F0F1 ATP synthase subunit beta -
  FGK94_RS02280 (NCTC11854_00478) - 501757..502632 (-) 876 WP_012515431.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 31864.95 Da        Isoelectric Point: 10.3087

>NTDB_id=1126858 FGK94_RS02250 WP_138082907.1 496947..497825(-) (endA) [Streptococcus equi subsp. zooepidemicus strain NCTC11854]
MIKKKKDIRLLNAFLALLLVLGTGYLAGHDDLAADNPIKQVYQRIFGSDPQQAGLPKASRDWDTPSKALADSVMTATIKQ
QLGDVITWNGTGAYIINHNKTTLNAKVASLPYANNKTKLVQGRSVPTVANALLTKSTRQYQKRNDTGNGYSSWKPAGWHQ
VQGLKGRYSHAVDRGHLLGYALVGGLKGFDASMANPSNIATQTAWANQAANERSTGQNYYETKIRRALDSNKRVRYRVTL
LYDGNNLLASGSHLEAKSSDGSLEFNVFIPNVQAGLQIDYQTGQITVASSQP

Nucleotide


Download         Length: 879 bp        

>NTDB_id=1126858 FGK94_RS02250 WP_138082907.1 496947..497825(-) (endA) [Streptococcus equi subsp. zooepidemicus strain NCTC11854]
ATGATCAAAAAGAAGAAAGACATTAGGCTGCTTAATGCCTTTTTAGCGCTGTTGCTTGTTCTTGGAACAGGTTATTTGGC
AGGACATGATGACCTAGCAGCTGATAATCCGATCAAGCAGGTCTACCAAAGGATTTTTGGCTCTGACCCGCAGCAAGCCG
GGCTACCAAAGGCAAGCCGAGACTGGGACACTCCCTCCAAGGCCTTGGCAGATTCGGTCATGACAGCCACCATCAAACAG
CAATTAGGTGATGTGATTACTTGGAATGGCACCGGTGCCTATATTATTAACCATAATAAAACAACGCTAAATGCAAAGGT
AGCTAGTCTCCCCTATGCCAATAATAAAACAAAACTGGTACAAGGGCGAAGTGTTCCTACCGTAGCCAACGCCCTGCTAA
CCAAGTCAACTCGACAGTATCAGAAGCGCAATGACACTGGAAATGGCTATAGCTCATGGAAGCCTGCTGGCTGGCATCAG
GTTCAAGGATTAAAGGGAAGATACAGTCACGCAGTAGATAGAGGACACCTCCTGGGCTATGCACTTGTTGGTGGGCTAAA
GGGCTTTGATGCCTCAATGGCTAATCCCAGTAATATTGCTACTCAAACCGCATGGGCCAATCAAGCAGCCAACGAGCGAT
CAACCGGACAAAACTATTATGAAACAAAGATTCGCAGAGCCCTAGATAGCAACAAGCGTGTCCGCTATCGTGTAACCCTA
CTTTATGATGGAAATAACCTCTTAGCAAGCGGCAGTCACCTTGAGGCAAAGTCATCAGACGGTAGCTTAGAATTTAACGT
CTTTATCCCTAATGTACAGGCTGGATTACAGATTGATTATCAAACAGGTCAGATCACTGTAGCTTCTTCCCAGCCTTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(112-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

67.257

77.397

0.521
  endA Streptococcus pneumoniae D39

67.257

77.397

0.521
  endA Streptococcus pneumoniae R6

67.257

77.397

0.521
  endA Streptococcus pneumoniae TIGR4

67.257

77.397

0.521

Multiple sequence alignment