Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   E0F34_RS12010 Genome accession   NZ_LR536843
Coordinates   1745590..1746411 (-) Length   273 a.a.
NCBI ID   WP_001826799.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1740590..1751411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F34_RS09405 (SAMEA104035599_01794) - 1741134..1741451 (-) 318 WP_000615767.1 thioredoxin family protein -
  E0F34_RS09410 (SAMEA104035599_01795) - 1741448..1741747 (-) 300 WP_025171409.1 DUF4651 domain-containing protein -
  E0F34_RS11995 - 1741945..1742025 (-) 81 WP_223200442.1 hypothetical protein -
  E0F34_RS09420 - 1742032..1742223 (-) 192 WP_000291826.1 cell wall-binding protein -
  E0F34_RS09425 (SAMEA104035599_01796) - 1742384..1743058 (-) 675 WP_000725749.1 LiaF transmembrane domain-containing protein -
  E0F34_RS09430 (SAMEA104035599_01797) - 1743064..1743510 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  E0F34_RS09435 (SAMEA104035599_01798) - 1743624..1744127 (-) 504 WP_130885246.1 phosphatase PAP2 family protein -
  E0F34_RS09440 (SAMEA104035599_01799) - 1744124..1744486 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  E0F34_RS12000 (SAMEA104035599_01800) - 1744552..1745583 (-) 1032 Protein_1779 ATP-binding cassette domain-containing protein -
  E0F34_RS12010 (SAMEA104035599_01801) rcrP 1745590..1746411 (-) 822 WP_001826799.1 ABC transporter permease Regulator
  E0F34_RS09450 (SAMEA104035599_01802) - 1746428..1746899 (-) 472 Protein_1781 MarR family winged helix-turn-helix transcriptional regulator -
  E0F34_RS09460 (SAMEA104035599_01803) - 1747023..1747739 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  E0F34_RS09470 (SAMEA104035599_01804) ply 1748620..1750035 (-) 1416 WP_001284359.1 cholesterol-dependent cytolysin pneumolysin -
  E0F34_RS09475 (SAMEA104035599_01805) - 1750046..1750456 (-) 411 WP_000595758.1 hypothetical protein -
  E0F34_RS09480 (SAMEA104035599_01806) - 1750449..1751057 (-) 609 WP_000083614.1 hypothetical protein -

Sequence

Protein


Download         Length: 273 a.a.        Molecular weight: 30572.17 Da        Isoelectric Point: 5.9257

>NTDB_id=1126601 E0F34_RS12010 WP_001826799.1 1745590..1746411(-) (rcrP) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQGTNLDELWQPASMMMGMLFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGSIMAIWAIGKILGHSEYWLWAVLVAVIVNVLMTTV
LMTLDFPKQSLIQGLIDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIVFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=1126601 E0F34_RS12010 WP_001826799.1 1745590..1746411(-) (rcrP) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGGAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGCTCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGCGTGGTTCAATTATGGCTATTTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTTTGGGCCGTACTTGTGGCAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGACTTTCCAAAACAGTCCTTGATTCAGGGGCTGATAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTA
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTGT
TTTCATGTCTTATGCCATGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(3-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

56.842

100

0.593

Multiple sequence alignment