Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   E0F31_RS09370 Genome accession   NZ_LR216064
Coordinates   1745566..1746597 (-) Length   343 a.a.
NCBI ID   WP_050206558.1    Uniprot ID   A0A111CNK4
Organism   Streptococcus pneumoniae strain GPSC13 substr. ST473 isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1740566..1751597
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F31_RS09325 (SAMEA3714520_01756) - 1740651..1741412 (-) 762 WP_001107748.1 SDR family NAD(P)-dependent oxidoreductase -
  E0F31_RS09330 (SAMEA3714520_01757) ytpR 1741454..1742080 (-) 627 WP_000578309.1 YtpR family tRNA-binding protein -
  E0F31_RS09335 (SAMEA3714520_01758) - 1742096..1742413 (-) 318 WP_000615767.1 thioredoxin family protein -
  E0F31_RS09340 (SAMEA3714520_01759) - 1742410..1742709 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  E0F31_RS12125 - 1742803..1742934 (+) 132 WP_001823606.1 hypothetical protein -
  E0F31_RS11935 - 1742959..1743039 (-) 81 WP_223200442.1 hypothetical protein -
  E0F31_RS09345 - 1743046..1743237 (-) 192 WP_000291826.1 cell wall-binding protein -
  E0F31_RS09350 (SAMEA3714520_01760) - 1743398..1744072 (-) 675 WP_000725742.1 LiaF transmembrane domain-containing protein -
  E0F31_RS09355 (SAMEA3714520_01761) - 1744078..1744524 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  E0F31_RS09360 (SAMEA3714520_01762) - 1744638..1745141 (-) 504 WP_050206556.1 phosphatase PAP2 family protein -
  E0F31_RS09365 (SAMEA3714520_01763) - 1745138..1745500 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  E0F31_RS09370 (SAMEA3714520_01764) rcrQ 1745566..1746597 (-) 1032 WP_050206558.1 ABC transporter ATP-binding protein Regulator
  E0F31_RS09375 (SAMEA3714520_01766) - 1746604..1747414 (-) 811 Protein_1777 ABC transporter permease -
  E0F31_RS09380 (SAMEA3714520_01767) - 1747431..1747902 (-) 472 Protein_1778 MarR family winged helix-turn-helix transcriptional regulator -
  E0F31_RS09390 (SAMEA3714520_01768) - 1748026..1748742 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  E0F31_RS09400 (SAMEA3714520_01769) ply 1749625..1751040 (-) 1416 WP_050206561.1 cholesterol-dependent cytolysin pneumolysin -
  E0F31_RS09405 (SAMEA3714520_01770) - 1751051..1751461 (-) 411 WP_000595757.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37867.08 Da        Isoelectric Point: 4.4297

>NTDB_id=1126285 E0F31_RS09370 WP_050206558.1 1745566..1746597(-) (rcrQ) [Streptococcus pneumoniae strain GPSC13 substr. ST473 isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6]
MGFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGTGKTTIVNLLMKFYEIDKGSIHI
DGVDTKAMTRSEVHDAFSMVLQDIWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIACALLKDASLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=1126285 E0F31_RS09370 WP_050206558.1 1745566..1746597(-) (rcrQ) [Streptococcus pneumoniae strain GPSC13 substr. ST473 isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGCCGACTGGGACTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCACATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATATCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTTGTGCCCTTCTTAAGGATGCATCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(120-265)

ABC transporter (ABC_tran)

(68-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A111CNK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

79.464

65.306

0.519
  rcrP Streptococcus mutans UA159

37.572

100

0.379

Multiple sequence alignment