Detailed information NTG1126278

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: E0F31_RS09125
• Genome accession: NZ_LR216064
• Coordinates: 1708224..1709150 (-)
• Length: 308 a.a.
• NCBI ID: WP_001291293.1
• Uniprot ID: -
• Organism: Streptococcus pneumoniae strain GPSC13 substr. ST473 isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1703224..1714150

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E0F31_RS09105 (SAMEA3714520_01712)	treR	1704332..1705042 (+)	711	WP_000760673.1	trehalose operon repressor	Regulator
E0F31_RS09110 (SAMEA3714520_01713)	-	1705075..1705878 (-)	804	WP_054363272.1	ABC transporter ATP-binding protein	-
E0F31_RS09115 (SAMEA3714520_01714)	-	1705891..1706784 (-)	894	WP_001012090.1	ABC transporter permease	-
E0F31_RS09120	-	1706796..1707605 (-)	810	Protein_1741	ABC transporter substrate-binding protein	-
E0F31_RS09125 (SAMEA3714520_01717)	amiF	1708224..1709150 (-)	927	WP_001291293.1	ATP-binding cassette domain-containing protein	Regulator
E0F31_RS09130 (SAMEA3714520_01718)	amiE	1709161..1710228 (-)	1068	WP_000159556.1	ABC transporter ATP-binding protein	Regulator
E0F31_RS09135 (SAMEA3714520_01719)	amiD	1710237..1711163 (-)	927	WP_000103700.1	oligopeptide ABC transporter permease OppC	Regulator
E0F31_RS09140 (SAMEA3714520_01720)	amiC	1711163..1712659 (-)	1497	WP_054363273.1	ABC transporter permease	Regulator

Sequence

Protein

• Length: 308 a.a.
• Molecular weight: 34796.85 Da
• Isoelectric Point: 6.6224

>NTDB_id=1126278 E0F31_RS09125 WP_001291293.1 1708224..1709150(-) (amiF) [Streptococcus pneumoniae strain GPSC13 substr. ST473 isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFDGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHRLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQKGLN

Nucleotide

• Length: 927 bp

>NTDB_id=1126278 E0F31_RS09125 WP_001291293.1 1708224..1709150(-) (amiF) [Streptococcus pneumoniae strain GPSC13 substr. ST473 isolate 569492b0-41bd-11e5-998e-3c4a9275d6c6]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCCGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTAAATGATACAAGTAATGGAGATATCATTTTTGATGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCCGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCGTTTATTTAAGGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTAGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAATTCTCAGGCGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCAGATGAGCCAATTTCAGCCTTGGACGTTTCTGTACGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAGCTCGGCCTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATCCCAGATCCAATTTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGATCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCCGAATTGGCACGTTATCAAAAAGGACTAAACTAG

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (230-262)

• ABC transporter (ABC_tran) (25-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMG 18311	85.574	99.026	0.847
amiF	Streptococcus salivarius strain HSISS4	85.574	99.026	0.847
amiF	Streptococcus thermophilus LMD-9	85.246	99.026	0.844