Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   E0F39_RS12890 Genome accession   NZ_LR216060
Coordinates   1844083..1845114 (-) Length   343 a.a.
NCBI ID   WP_000506424.1    Uniprot ID   A0A0B7LYB2
Organism   Streptococcus pneumoniae strain GPSC47 substr. ST315     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1839083..1850114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F39_RS09940 (SAMEA3713867_01877) - 1839177..1839938 (-) 762 WP_001107745.1 SDR family NAD(P)-dependent oxidoreductase -
  E0F39_RS09945 (SAMEA3713867_01878) ytpR 1839971..1840597 (-) 627 WP_000578309.1 YtpR family tRNA-binding protein -
  E0F39_RS09950 (SAMEA3713867_01879) - 1840613..1840930 (-) 318 WP_000615767.1 thioredoxin family protein -
  E0F39_RS09955 (SAMEA3713867_01880) - 1840927..1841226 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  E0F39_RS12885 - 1841476..1841541 (-) 66 Protein_1895 choline-binding protein A -
  E0F39_RS09960 - 1841563..1841754 (-) 192 WP_000291826.1 cell wall-binding protein -
  E0F39_RS09965 (SAMEA3713867_01881) - 1841915..1842589 (-) 675 WP_000725742.1 LiaF transmembrane domain-containing protein -
  E0F39_RS09970 (SAMEA3713867_01882) - 1842595..1843041 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  E0F39_RS09975 (SAMEA3713867_01883) - 1843155..1843658 (-) 504 WP_000800947.1 phosphatase PAP2 family protein -
  E0F39_RS09980 (SAMEA3713867_01884) - 1843655..1844017 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  E0F39_RS12890 (SAMEA3713867_01885) rcrQ 1844083..1845114 (-) 1032 WP_000506424.1 ABC transporter ATP-binding protein Regulator
  E0F39_RS12895 (SAMEA3713867_01886) rcrP 1845121..1845942 (-) 822 WP_000601672.1 ABC transporter permease Regulator
  E0F39_RS09990 (SAMEA3713867_01887) - 1845959..1846430 (-) 472 Protein_1903 MarR family winged helix-turn-helix transcriptional regulator -
  E0F39_RS10000 (SAMEA3713867_01888) - 1846554..1847270 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  E0F39_RS10010 (SAMEA3713867_01889) ply 1848151..1849566 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  E0F39_RS10015 (SAMEA3713867_01890) - 1849577..1849987 (-) 411 WP_000595757.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37918.12 Da        Isoelectric Point: 4.4764

>NTDB_id=1126237 E0F39_RS12890 WP_000506424.1 1844083..1845114(-) (rcrQ) [Streptococcus pneumoniae strain GPSC47 substr. ST315]
MGFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGTGKTTIVNLLMKFYEIDKGSIHI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=1126237 E0F39_RS12890 WP_000506424.1 1844083..1845114(-) (rcrQ) [Streptococcus pneumoniae strain GPSC47 substr. ST315]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGCCGACTGGGACTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCACATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(120-265)

ABC transporter (ABC_tran)

(68-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7LYB2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.804

65.306

0.528
  rcrP Streptococcus mutans UA159

37.861

100

0.382

Multiple sequence alignment