Detailed information NTG1125949

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: E0E40_RS10145
• Genome accession: NZ_LR215967
• Coordinates: 2273685..2274338 (+)
• Length: 217 a.a.
• NCBI ID: WP_027374733.1
• Uniprot ID: -
• Organism: Chryseobacterium indologenes strain 3012STDY6981895
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2268685..2279338

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E0E40_RS10130 (NCTC11409_02088)	aceA	2269011..2270291 (-)	1281	WP_061085148.1	isocitrate lyase	-
E0E40_RS10135 (NCTC11409_02089)	aceB	2270418..2271992 (-)	1575	WP_088584360.1	malate synthase A	-
E0E40_RS10140 (NCTC11409_02090)	-	2272119..2273597 (+)	1479	WP_088584361.1	helix-turn-helix domain-containing protein	-
E0E40_RS10145 (NCTC11409_02091)	comF	2273685..2274338 (+)	654	WP_027374733.1	ComF family protein	Machinery gene
E0E40_RS10150 (NCTC11409_02092)	-	2274467..2275153 (+)	687	WP_130867570.1	alpha/beta fold hydrolase	-
E0E40_RS10155 (NCTC11409_02093)	upp	2275155..2275805 (-)	651	WP_098971885.1	uracil phosphoribosyltransferase	-
E0E40_RS10160 (NCTC11409_02094)	der	2275960..2277270 (-)	1311	WP_027374736.1	ribosome biogenesis GTPase Der	-

Sequence

Protein

• Length: 217 a.a.
• Molecular weight: 25454.48 Da
• Isoelectric Point: 8.0805

>NTDB_id=1125949 E0E40_RS10145 WP_027374733.1 2273685..2274338(+) (comF) [Chryseobacterium indologenes strain 3012STDY6981895]
MILDLLFPNRCIHCNRMIDAELLVCDLCFDQIHFTHYNYFENNPIREKCSLLFPVENTFALIQFEKENLSRKLIHELKYK
GREKVGKILAEWTTEVVDFKNRKPDLLVSVPLHPKKLRERGYNQLHLFTETLSEFYRIPFDHQLIKRNHYSKAQALKDKK
HRLETVNTFSLTQPVSGQHILLIDDVFTTGNTISSIAWEILNSGNNRVSVLVMAIDV

Nucleotide

• Length: 654 bp

>NTDB_id=1125949 E0E40_RS10145 WP_027374733.1 2273685..2274338(+) (comF) [Chryseobacterium indologenes strain 3012STDY6981895]
ATGATACTTGACCTATTATTTCCTAACCGCTGTATTCATTGCAACAGAATGATTGATGCTGAGTTATTGGTATGTGATTT
ATGTTTTGATCAGATTCATTTTACGCATTACAATTATTTCGAAAACAATCCTATTCGCGAAAAATGCAGCCTGCTCTTTC
CTGTTGAGAATACCTTTGCTCTGATACAGTTTGAAAAAGAAAACCTGAGCAGGAAGCTTATCCATGAGCTCAAATATAAA
GGAAGGGAGAAAGTCGGAAAAATTCTTGCAGAATGGACCACGGAAGTAGTGGATTTTAAAAACCGGAAACCCGATCTCCT
GGTAAGCGTTCCTCTTCATCCGAAAAAATTAAGAGAAAGGGGATATAATCAGCTTCACCTTTTCACGGAGACATTGTCGG
AATTTTACAGGATTCCGTTTGATCATCAGCTTATCAAAAGAAATCACTATTCAAAAGCCCAGGCATTAAAAGATAAGAAA
CACAGGCTGGAAACTGTGAATACCTTTTCTTTAACCCAACCTGTTAGCGGGCAACATATTTTACTGATCGATGATGTCTT
TACTACCGGCAATACCATCTCTTCTATAGCCTGGGAGATTTTAAATTCCGGCAACAATAGGGTGAGTGTATTGGTAATGG
CTATAGATGTTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (2-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Riemerella anatipestifer ATCC 11845 = DSM 15868	51.389	99.539	0.512