Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   CJ8421_RS06665 Genome accession   NZ_CP005388
Coordinates   1273368..1273883 (-) Length   171 a.a.
NCBI ID   WP_002860795.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni CG8421     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1268368..1278883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ8421_RS06650 (CJ8421_06690) - 1269053..1270870 (-) 1818 WP_038400672.1 motility associated factor glycosyltransferase family protein -
  CJ8421_RS06655 - 1270867..1272114 (-) 1248 Protein_1283 hypothetical protein -
  CJ8421_RS06660 (CJ8421_06725) - 1272124..1273368 (-) 1245 WP_002860796.1 DUF2920 family protein -
  CJ8421_RS06665 (CJ8421_06730) ctsG 1273368..1273883 (-) 516 WP_002860795.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CJ8421_RS06670 (CJ8421_06735) tsaD 1273884..1274891 (-) 1008 WP_002860794.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  CJ8421_RS06675 (CJ8421_06740) - 1274888..1276282 (-) 1395 WP_002860793.1 M99 family carboxypeptidase catalytic domain-containing protein -
  CJ8421_RS06680 (CJ8421_06745) dxr 1276284..1277354 (-) 1071 WP_002860792.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  CJ8421_RS06685 (CJ8421_06750) cdsA 1277351..1278076 (-) 726 WP_002860791.1 phosphatidate cytidylyltransferase -
  CJ8421_RS06690 (CJ8421_06755) - 1278085..1278423 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18677.62 Da        Isoelectric Point: 7.8497

>NTDB_id=112567 CJ8421_RS06665 WP_002860795.1 1273368..1273883(-) (ctsG) [Campylobacter jejuni subsp. jejuni CG8421]
MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDDKECLKLVFINKADFILMGISSNKASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=112567 CJ8421_RS06665 WP_002860795.1 1273368..1273883(-) (ctsG) [Campylobacter jejuni subsp. jejuni CG8421]
ATGAAAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATAAAGCAAGTAAAAATGCTATCATCAACGCAGCTAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

93.567

100

0.936

Multiple sequence alignment