Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   EL283_RS05720 Genome accession   NZ_LR134534
Coordinates   1065489..1066223 (-) Length   244 a.a.
NCBI ID   WP_126419102.1    Uniprot ID   -
Organism   Campylobacter insulaenigrae strain NCTC12928     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1060489..1071223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL283_RS05680 (NCTC12928_01174) holA 1061163..1062128 (+) 966 WP_126419099.1 DNA polymerase III subunit delta -
  EL283_RS05685 (NCTC12928_01175) rpsF 1062223..1062597 (+) 375 WP_126419100.1 30S ribosomal protein S6 -
  EL283_RS05690 (NCTC12928_01176) - 1062600..1063133 (+) 534 WP_039650256.1 single-stranded DNA-binding protein -
  EL283_RS05695 (NCTC12928_01177) rpsR 1063144..1063404 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  EL283_RS05700 (NCTC12928_01178) - 1063455..1064090 (+) 636 WP_039650258.1 MarC family protein -
  EL283_RS05705 (NCTC12928_01179) - 1064065..1064499 (-) 435 WP_039650260.1 hypothetical protein -
  EL283_RS05710 (NCTC12928_01180) - 1064496..1065218 (-) 723 WP_126419101.1 type II secretion system protein -
  EL283_RS05715 (NCTC12928_01181) - 1065199..1065492 (-) 294 WP_039650262.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  EL283_RS05720 (NCTC12928_01182) proC 1065489..1066223 (-) 735 WP_126419102.1 pyrroline-5-carboxylate reductase Machinery gene
  EL283_RS05725 (NCTC12928_01183) fliW 1066223..1066621 (-) 399 WP_126419103.1 flagellar assembly protein FliW -
  EL283_RS05730 (NCTC12928_01184) bamD 1066803..1067459 (+) 657 WP_039650265.1 outer membrane protein assembly factor BamD -
  EL283_RS05735 (NCTC12928_01185) lon 1067459..1069837 (+) 2379 WP_039650266.1 endopeptidase La -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26768.24 Da        Isoelectric Point: 7.6590

>NTDB_id=1124147 EL283_RS05720 WP_126419102.1 1065489..1066223(-) (proC) [Campylobacter insulaenigrae strain NCTC12928]
MSEIYILGSGAMASALAKGLCDNYEVTIVARDITKNIISCSNIKIISYDEFNLEDKNIILAFKPYALDEVASKLSGKAKW
IISVLANTSFEKLHIIQAQNYVKIMPNIAAKFKASATPYLMEKLLFNDEILALLNTFGKAFLLQNEKEFDIAMVLSGCAP
AFLSLVAESLANAGVRNGLNNTLSYELTRSTFESFSALFNKEHPALIKEKICSPAGVTIKGIEALEKKAVRAAFFEAFLA
SMNK

Nucleotide


Download         Length: 735 bp        

>NTDB_id=1124147 EL283_RS05720 WP_126419102.1 1065489..1066223(-) (proC) [Campylobacter insulaenigrae strain NCTC12928]
ATGTCTGAAATTTATATTTTGGGAAGTGGTGCTATGGCAAGTGCTTTAGCGAAAGGATTGTGTGATAATTATGAGGTTAC
TATTGTTGCAAGAGATATTACTAAAAATATCATATCGTGTTCGAATATTAAAATCATTTCTTATGATGAATTTAATTTAG
AAGATAAAAATATAATTTTAGCTTTTAAACCTTATGCTTTAGATGAGGTAGCTAGTAAGTTATCAGGAAAGGCAAAATGG
ATAATTTCCGTTTTAGCAAACACTTCTTTTGAAAAACTCCATATTATACAAGCACAAAATTATGTAAAAATAATGCCCAA
TATTGCAGCAAAGTTTAAAGCTTCAGCAACTCCATATTTGATGGAAAAGCTATTATTTAATGATGAAATTTTAGCATTGT
TAAATACCTTTGGTAAAGCTTTTTTACTTCAAAATGAAAAAGAATTTGATATAGCAATGGTTCTAAGTGGTTGTGCGCCG
GCATTTTTGTCTTTAGTAGCAGAATCATTAGCTAATGCTGGAGTGAGGAATGGATTGAATAATACTTTAAGTTATGAATT
AACTAGATCGACTTTTGAAAGTTTTAGTGCATTATTTAATAAAGAACATCCTGCATTAATTAAGGAAAAGATTTGCTCTC
CTGCAGGAGTGACAATAAAAGGAATAGAAGCTTTAGAAAAAAAAGCTGTAAGAGCTGCATTTTTTGAAGCATTTTTGGCA
AGTATGAATAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(146-243)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

57.851

99.18

0.574

Multiple sequence alignment