Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   EL267_RS04465 Genome accession   NZ_LR134520
Coordinates   838936..840753 (+) Length   605 a.a.
NCBI ID   WP_017285320.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain NCTC13947     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 833936..845753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL267_RS04445 (NCTC13947_00864) gdhA 834242..835591 (+) 1350 WP_000200435.1 NADP-specific glutamate dehydrogenase -
  EL267_RS04450 (NCTC13947_00865) - 835661..836071 (+) 411 WP_000594935.1 peptide deformylase -
  EL267_RS04455 (NCTC13947_00866) - 836108..838180 (-) 2073 WP_121205305.1 surface-anchored 5'-nucleotidase -
  EL267_RS04460 (NCTC13947_00867) - 838449..838889 (+) 441 WP_000431168.1 MarR family winged helix-turn-helix transcriptional regulator -
  EL267_RS04465 (NCTC13947_00868) rcrP 838936..840753 (+) 1818 WP_017285320.1 ABC transporter ATP-binding protein Regulator
  EL267_RS04470 (NCTC13947_00869) rcrQ 840743..842497 (+) 1755 WP_000851083.1 ABC transporter ATP-binding protein Regulator
  EL267_RS04475 (NCTC13947_00870) - 842605..843231 (+) 627 WP_000449636.1 GTP pyrophosphokinase family protein -
  EL267_RS04480 (NCTC13947_00871) - 843233..843919 (+) 687 WP_001264422.1 response regulator transcription factor -
  EL267_RS04485 (NCTC13947_00872) - 843919..845148 (+) 1230 WP_000489520.1 sensor histidine kinase -

Sequence


Protein


Download         Length: 605 a.a.        Molecular weight: 67466.24 Da        Isoelectric Point: 6.7838

>NTDB_id=1123804 EL267_RS04465 WP_017285320.1 838936..840753(+) (rcrP) [Streptococcus agalactiae strain NCTC13947]
MFNIFKRLNGKEWLMIVASTILVCLAVWMDLKTPEYMSDITRMLQTKGTKLEALWDPGLKMLAFSFGSFLVAVMVGFLGA
RTAASFTSRLRSDIFNHVMDYSDAEIKRFSIPSLLTRTTNDLTQLQILIVMGMQVVTRGPIMAIWALTKIWGKSDQWTGA
VGVAVIIVMILLSVLLLLAFPRQRQIQGFTDALNATTREALSGVRVIRAYNAEKYQTDKFKRENDDLTKLNLFVYRLMSL
MNPVMTVVSSGLTLAIYWIGSYLINDISVPKVTGTSVSVLAAKSAITDRVDLFSNMVVFSSYAMQVVMGFMMMVAIFIIM
PRALVSARRINEVLTLAPTVTFKENSHIQSAQKGQIEFQDVSFHYSKDSEAVIEHVSFKADTGQTVAFIGSTGSGKSTLV
NLVPRFYDATEGAIKLDGIDIKEYSHNDLNNKIGYIPQKVVLFSGTVRSNMILGESGREELSDEEIWQALELAQAKEFIE
AKEKGLDTEVAQGGSNFSGGQKQRLAIARALARHPEILIFDDSFSALDYKTDHILRHELKEKTAAMTKLIVAQRISTIMD
ADLILVLDQGKVVGQGTHKELLSNNEVYQEIAYSQLSKEELENEN

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1123804 EL267_RS04465 WP_017285320.1 838936..840753(+) (rcrP) [Streptococcus agalactiae strain NCTC13947]
ATGTTTAATATTTTCAAGCGACTCAATGGTAAAGAATGGTTGATGATTGTGGCGAGTACTATATTAGTGTGTCTAGCGGT
TTGGATGGACCTAAAGACTCCAGAATATATGTCTGATATCACACGTATGTTGCAAACTAAAGGTACAAAGTTAGAGGCTC
TTTGGGATCCTGGACTAAAAATGCTTGCCTTTTCATTTGGTAGTTTTTTAGTAGCAGTAATGGTAGGTTTTTTAGGTGCT
AGGACAGCAGCTAGTTTTACTAGTCGATTACGTTCAGATATTTTTAACCATGTGATGGATTATTCTGATGCAGAAATTAA
GCGATTTTCTATCCCCTCTCTATTAACGCGCACAACTAACGACTTGACTCAGCTACAGATCCTTATTGTAATGGGAATGC
AGGTTGTTACCCGTGGACCAATTATGGCAATATGGGCTTTGACTAAAATTTGGGGTAAAAGCGATCAATGGACTGGGGCA
GTTGGAGTAGCGGTTATTATCGTTATGATATTACTTAGCGTTCTACTCTTACTCGCTTTTCCGAGACAACGTCAAATCCA
AGGTTTTACAGATGCGCTTAATGCAACTACTAGAGAGGCACTCTCTGGTGTTAGAGTTATTCGTGCCTACAATGCTGAAA
AGTATCAAACAGATAAGTTCAAACGTGAAAATGACGATTTAACAAAATTGAACCTTTTTGTTTATAGATTGATGTCGCTT
ATGAATCCTGTGATGACAGTGGTTTCATCTGGATTGACTTTAGCTATTTATTGGATTGGCTCTTATTTGATTAATGATAT
CTCTGTGCCTAAAGTTACAGGAACAAGTGTATCTGTATTGGCTGCTAAATCAGCTATCACTGATCGAGTGGATCTTTTTT
CAAACATGGTTGTTTTTTCATCTTATGCTATGCAAGTTGTTATGGGATTTATGATGATGGTAGCTATTTTTATCATCATG
CCTCGTGCTTTAGTATCGGCTAGACGTATTAATGAGGTACTAACTTTAGCCCCAACAGTAACTTTTAAAGAAAATAGTCA
TATTCAAAGTGCACAAAAAGGTCAAATTGAGTTTCAAGATGTGTCATTTCATTATAGTAAAGATTCTGAAGCGGTTATTG
AACATGTATCTTTCAAAGCAGATACTGGTCAGACAGTGGCATTTATTGGGTCTACAGGTTCTGGAAAATCCACTTTAGTC
AATTTAGTTCCACGTTTTTATGACGCCACAGAGGGGGCAATTAAACTTGATGGCATTGATATAAAGGAATACTCTCACAA
TGATTTGAATAATAAAATTGGCTATATTCCACAGAAAGTTGTTCTCTTTAGTGGGACAGTACGTTCTAATATGATTTTGG
GAGAGAGTGGCAGGGAGGAACTTAGTGATGAAGAAATTTGGCAAGCACTCGAATTAGCGCAAGCTAAAGAATTTATCGAG
GCTAAAGAAAAAGGATTAGATACAGAAGTCGCTCAAGGTGGTAGTAACTTTTCAGGAGGACAAAAACAACGCTTGGCAAT
TGCACGTGCTTTAGCACGTCACCCTGAAATTCTCATTTTTGATGACTCATTTTCAGCGTTAGATTATAAAACAGATCATA
TTTTACGCCATGAGCTGAAAGAAAAAACAGCTGCTATGACGAAATTAATTGTCGCTCAACGCATTTCAACTATCATGGAT
GCTGATCTCATTTTAGTGCTAGATCAAGGTAAAGTTGTTGGGCAAGGAACACATAAGGAATTGTTATCAAATAATGAAGT
GTATCAAGAGATAGCCTATTCTCAATTGTCTAAGGAGGAATTGGAAAATGAAAACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

77.944

99.669

0.777


Multiple sequence alignment