Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   EL264_RS00835 Genome accession   NZ_LR134519
Coordinates   171792..172055 (+) Length   87 a.a.
NCBI ID   WP_000584956.1    Uniprot ID   -
Organism   Helicobacter pylori strain NCTC12823     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 166792..177055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL264_RS00805 (NCTC12823_00167) groES 167075..167431 (-) 357 WP_126473932.1 co-chaperone GroES -
  EL264_RS00815 (NCTC12823_00168) dnaG 167717..169396 (+) 1680 WP_126473934.1 DNA primase -
  EL264_RS00820 (NCTC12823_00169) - 169393..170445 (+) 1053 WP_126473936.1 MnmA/TRMU family protein -
  EL264_RS00825 (NCTC12823_00170) - 170538..171365 (+) 828 WP_126473938.1 DUF5718 family protein -
  EL264_RS00830 (NCTC12823_00171) comB2 171511..171792 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  EL264_RS00835 (NCTC12823_00172) comB3 171792..172055 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  EL264_RS00840 (NCTC12823_00173) comB4 172057..174420 (+) 2364 WP_126473940.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  EL264_RS00850 (NCTC12823_00175) - 174720..176060 (+) 1341 WP_164757108.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10006.08 Da        Isoelectric Point: 9.5290

>NTDB_id=1123775 EL264_RS00835 WP_000584956.1 171792..172055(+) (comB3) [Helicobacter pylori strain NCTC12823]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=1123775 EL264_RS00835 WP_000584956.1 171792..172055(+) (comB3) [Helicobacter pylori strain NCTC12823]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCACTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAAACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment