Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   EL243_RS07275 Genome accession   NZ_LR134511
Coordinates   1407108..1407716 (-) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni subsp. jejuni strain NCTC10983     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1402108..1412716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL243_RS07250 (NCTC10983_01469) - 1402266..1403030 (+) 765 WP_002851318.1 TIGR02757 family protein -
  EL243_RS07255 (NCTC10983_01470) - 1403034..1403798 (+) 765 WP_002851426.1 TSUP family transporter -
  EL243_RS07260 (NCTC10983_01472) - 1403791..1404971 (-) 1181 Protein_1401 type II secretion system F family protein -
  EL243_RS07265 (NCTC10983_01473) ctsE 1404968..1406527 (-) 1560 WP_002864463.1 GspE/PulE family protein Machinery gene
  EL243_RS07270 (NCTC10983_01474) ctsX 1406517..1407104 (-) 588 WP_002851370.1 membrane protein Machinery gene
  EL243_RS07275 (NCTC10983_01475) ctsP 1407108..1407716 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  EL243_RS07280 (NCTC10983_01476) ctsD 1407709..1409127 (-) 1419 WP_002851309.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  EL243_RS07285 (NCTC10983_01477) ctsR 1409099..1409416 (-) 318 WP_002851255.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=1123594 EL243_RS07275 WP_002851464.1 1407108..1407716(-) (ctsP) [Campylobacter jejuni subsp. jejuni strain NCTC10983]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1123594 EL243_RS07275 WP_002851464.1 1407108..1407716(-) (ctsP) [Campylobacter jejuni subsp. jejuni strain NCTC10983]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTTGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995

Multiple sequence alignment