Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   EL235_RS04760 Genome accession   NZ_LR134508
Coordinates   918258..918986 (-) Length   242 a.a.
NCBI ID   WP_114640413.1    Uniprot ID   -
Organism   Campylobacter lari strain NCTC11937     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 913258..923986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL235_RS04720 (NCTC11937_00947) holA 913927..914892 (+) 966 WP_126340911.1 DNA polymerase III subunit delta -
  EL235_RS04725 (NCTC11937_00948) rpsF 914985..915359 (+) 375 WP_039626409.1 30S ribosomal protein S6 -
  EL235_RS04730 (NCTC11937_00949) - 915363..915890 (+) 528 WP_126340912.1 single-stranded DNA-binding protein -
  EL235_RS04735 (NCTC11937_00950) rpsR 915902..916162 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  EL235_RS04740 (NCTC11937_00951) - 916211..916852 (+) 642 WP_039626413.1 MarC family protein -
  EL235_RS04745 (NCTC11937_00952) - 916834..917256 (-) 423 WP_039626414.1 hypothetical protein -
  EL235_RS04750 (NCTC11937_00953) - 917253..917981 (-) 729 WP_126340913.1 type II secretion system protein -
  EL235_RS04755 (NCTC11937_00954) - 917965..918261 (-) 297 WP_039626416.1 hypothetical protein -
  EL235_RS04760 (NCTC11937_00955) proC 918258..918986 (-) 729 WP_114640413.1 pyrroline-5-carboxylate reductase Machinery gene
  EL235_RS04765 (NCTC11937_00956) fliW 918986..919381 (-) 396 WP_012661666.1 flagellar assembly protein FliW -
  EL235_RS04770 (NCTC11937_00957) bamD 919558..920214 (+) 657 WP_126340914.1 outer membrane protein assembly factor BamD -
  EL235_RS04775 (NCTC11937_00958) lon 920214..922592 (+) 2379 WP_039626422.1 endopeptidase La -
  EL235_RS04780 (NCTC11937_00959) - 922607..923980 (-) 1374 WP_039626424.1 MCP-domain energy taxis signal transduction protein -

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 26564.67 Da        Isoelectric Point: 6.2655

>NTDB_id=1123536 EL235_RS04760 WP_114640413.1 918258..918986(-) (proC) [Campylobacter lari strain NCTC11937]
MSEIYILGNGAMASAIAKGLKDTYKVVIVARDLKKASSLNLEVLSYEEFDLEDKNVILAFKPYALEEVAVKLKGKARWLI
SVLANTTFEQLHCIDAQNYIKIMPNTAAEFKASATAYLMENDSYKDEILSLLNTFGKAISLQNEKEFDVAMVLSGCAPAF
LALVAESLANAGVKNGLKNELSYEFTRASFESFSALFNHTHPAIIKEKICSPAGVTIRGVEALEKRALRGAFFEAFNASL
NK

Nucleotide


Download         Length: 729 bp        

>NTDB_id=1123536 EL235_RS04760 WP_114640413.1 918258..918986(-) (proC) [Campylobacter lari strain NCTC11937]
ATGTCTGAAATTTATATTTTAGGAAATGGCGCTATGGCAAGTGCTATAGCTAAAGGTTTAAAAGATACTTATAAAGTAGT
TATTGTTGCTAGGGATTTAAAAAAAGCTAGTAGCTTAAATTTAGAAGTTTTATCTTATGAAGAATTTGATTTAGAAGATA
AAAATGTTATTTTAGCATTTAAACCTTATGCTTTAGAAGAAGTAGCTGTTAAATTAAAAGGCAAGGCAAGATGGCTTATT
TCAGTTTTAGCAAATACTACTTTTGAGCAACTTCATTGTATTGATGCGCAAAATTATATAAAAATCATGCCAAATACAGC
AGCTGAATTTAAAGCCTCAGCGACTGCATATTTGATGGAAAATGATTCATATAAAGATGAAATTTTATCTTTGTTAAATA
CTTTTGGTAAAGCCATAAGTTTGCAAAATGAAAAAGAATTTGATGTGGCTATGGTTTTAAGTGGTTGTGCTCCTGCGTTT
TTGGCTTTGGTGGCAGAAAGTTTAGCAAATGCAGGTGTTAAAAATGGTTTAAAAAATGAGCTTAGTTATGAGTTTACTCG
TGCAAGTTTTGAAAGCTTTAGTGCTTTGTTTAACCATACACATCCTGCTATTATTAAAGAAAAAATTTGTTCTCCAGCAG
GGGTAACTATAAGAGGAGTTGAGGCTTTAGAAAAAAGAGCTTTGCGCGGTGCTTTTTTTGAAGCTTTTAATGCAAGTTTA
AACAAATGA

Domains

Predicted by InterproScan.

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-84)

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(144-241)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

58.577

98.76

0.579

Multiple sequence alignment