Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | EL270_RS05725 | Genome accession | NZ_LR134503 |
| Coordinates | 1277333..1277986 (+) | Length | 217 a.a. |
| NCBI ID | WP_039353903.1 | Uniprot ID | A0A0C1D2M6 |
| Organism | Kaistella jeonii strain NCTC13459 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1272333..1282986
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL270_RS05710 (NCTC13459_01176) | aceA | 1272517..1273809 (-) | 1293 | WP_208430876.1 | isocitrate lyase | - |
| EL270_RS05715 (NCTC13459_01177) | aceB | 1274056..1275633 (-) | 1578 | WP_039353897.1 | malate synthase A | - |
| EL270_RS05720 (NCTC13459_01178) | - | 1275811..1277280 (+) | 1470 | WP_052257516.1 | helix-turn-helix domain-containing protein | - |
| EL270_RS05725 (NCTC13459_01179) | comF | 1277333..1277986 (+) | 654 | WP_039353903.1 | ComF family protein | Machinery gene |
| EL270_RS05730 (NCTC13459_01180) | upp | 1278062..1278712 (-) | 651 | WP_039353906.1 | uracil phosphoribosyltransferase | - |
| EL270_RS05735 (NCTC13459_01181) | der | 1278794..1280101 (-) | 1308 | WP_039353909.1 | ribosome biogenesis GTPase Der | - |
| EL270_RS05740 (NCTC13459_01183) | - | 1280295..1280849 (+) | 555 | WP_039353912.1 | LemA family protein | - |
| EL270_RS05745 (NCTC13459_01184) | - | 1280854..1282779 (+) | 1926 | WP_074781429.1 | DUF2207 domain-containing protein | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25506.70 Da Isoelectric Point: 8.0092
>NTDB_id=1123453 EL270_RS05725 WP_039353903.1 1277333..1277986(+) (comF) [Kaistella jeonii strain NCTC13459]
MLLLDLLFPNRCVECNRIIHHDEAVCELCFDQIYFTHHDYSESNLLTEKCRLLFPIEQAFALMQFEEESTSQKIIHQLKY
GKREKIGKIIANWTLEKMDFTDLKPDLLVTVPLHPKKLKERGYNQLHLFTDTLSKELKIPCDHHLIKRNFYKKAQAKKRR
EQRTFNENLFSITKQISNQHILIIDDVFTTGNTMSAVAWEILKAGNNKVSILVMAMD
MLLLDLLFPNRCVECNRIIHHDEAVCELCFDQIYFTHHDYSESNLLTEKCRLLFPIEQAFALMQFEEESTSQKIIHQLKY
GKREKIGKIIANWTLEKMDFTDLKPDLLVTVPLHPKKLKERGYNQLHLFTDTLSKELKIPCDHHLIKRNFYKKAQAKKRR
EQRTFNENLFSITKQISNQHILIIDDVFTTGNTMSAVAWEILKAGNNKVSILVMAMD
Nucleotide
Download Length: 654 bp
>NTDB_id=1123453 EL270_RS05725 WP_039353903.1 1277333..1277986(+) (comF) [Kaistella jeonii strain NCTC13459]
ATGCTTTTACTGGATTTACTTTTCCCGAATCGCTGTGTGGAGTGCAATCGCATCATTCATCACGATGAAGCAGTGTGTGA
ATTGTGTTTTGACCAGATCTACTTTACGCATCATGACTATTCCGAAAGTAATCTTTTAACCGAAAAATGTCGCCTACTCT
TTCCAATCGAACAGGCGTTTGCATTAATGCAGTTCGAGGAAGAAAGTACAAGTCAAAAAATTATTCATCAGCTGAAATAT
GGAAAAAGGGAGAAAATTGGAAAAATTATTGCCAACTGGACATTAGAAAAAATGGATTTTACGGATTTGAAACCAGATCT
TTTGGTAACGGTTCCGCTTCATCCCAAAAAATTAAAAGAACGCGGTTACAATCAGTTGCATCTTTTTACCGATACGCTTT
CCAAAGAACTGAAAATACCGTGTGATCACCATTTAATCAAAAGGAATTTTTACAAAAAAGCACAAGCAAAAAAACGCCGG
GAGCAGAGAACTTTTAATGAAAATCTATTTTCAATTACGAAACAAATCTCAAATCAGCATATTTTAATTATCGACGATGT
TTTTACCACAGGAAATACGATGAGTGCTGTTGCGTGGGAAATTTTAAAAGCCGGAAATAATAAAGTGAGTATTTTGGTAA
TGGCGATGGATTGA
ATGCTTTTACTGGATTTACTTTTCCCGAATCGCTGTGTGGAGTGCAATCGCATCATTCATCACGATGAAGCAGTGTGTGA
ATTGTGTTTTGACCAGATCTACTTTACGCATCATGACTATTCCGAAAGTAATCTTTTAACCGAAAAATGTCGCCTACTCT
TTCCAATCGAACAGGCGTTTGCATTAATGCAGTTCGAGGAAGAAAGTACAAGTCAAAAAATTATTCATCAGCTGAAATAT
GGAAAAAGGGAGAAAATTGGAAAAATTATTGCCAACTGGACATTAGAAAAAATGGATTTTACGGATTTGAAACCAGATCT
TTTGGTAACGGTTCCGCTTCATCCCAAAAAATTAAAAGAACGCGGTTACAATCAGTTGCATCTTTTTACCGATACGCTTT
CCAAAGAACTGAAAATACCGTGTGATCACCATTTAATCAAAAGGAATTTTTACAAAAAAGCACAAGCAAAAAAACGCCGG
GAGCAGAGAACTTTTAATGAAAATCTATTTTCAATTACGAAACAAATCTCAAATCAGCATATTTTAATTATCGACGATGT
TTTTACCACAGGAAATACGATGAGTGCTGTTGCGTGGGAAATTTTAAAAGCCGGAAATAATAAAGTGAGTATTTTGGTAA
TGGCGATGGATTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
50.463 |
99.539 |
0.502 |