Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   EL228_RS07275 Genome accession   NZ_LR134497
Coordinates   1412572..1413087 (-) Length   171 a.a.
NCBI ID   WP_052802479.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC13268     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1407572..1418087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL228_RS07260 (NCTC13268_01509) - 1407685..1409502 (-) 1818 WP_126623843.1 motility associated factor glycosyltransferase family protein -
  EL228_RS07265 (NCTC13268_01510) - 1409499..1411322 (-) 1824 WP_126623844.1 motility associated factor glycosyltransferase family protein -
  EL228_RS07270 - 1411332..1412572 (-) 1241 Protein_1421 DUF2920 family protein -
  EL228_RS07275 (NCTC13268_01513) ctsG 1412572..1413087 (-) 516 WP_052802479.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  EL228_RS07280 (NCTC13268_01514) tsaD 1413088..1414095 (-) 1008 WP_002858276.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  EL228_RS07285 (NCTC13268_01515) - 1414092..1415486 (-) 1395 WP_002915833.1 M99 family carboxypeptidase catalytic domain-containing protein -
  EL228_RS07290 (NCTC13268_01516) dxr 1415488..1416558 (-) 1071 WP_002853864.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  EL228_RS07295 (NCTC13268_01517) cdsA 1416555..1417280 (-) 726 WP_126623845.1 phosphatidate cytidylyltransferase -
  EL228_RS07300 (NCTC13268_01518) - 1417289..1417627 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18795.58 Da        Isoelectric Point: 5.2731

>NTDB_id=1123322 EL228_RS07275 WP_052802479.1 1412572..1413087(-) (ctsG) [Campylobacter jejuni strain NCTC13268]
MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRTDFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGEM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1123322 EL228_RS07275 WP_052802479.1 1412572..1413087(-) (ctsG) [Campylobacter jejuni strain NCTC13268]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAACGGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCAAGTAAAACTTATCTTTTAATAGGGGAAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93

Multiple sequence alignment