Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   EL221_RS06770 Genome accession   NZ_LR134496
Coordinates   1302528..1303043 (-) Length   171 a.a.
NCBI ID   WP_002853848.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC13266     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1297528..1308043
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL221_RS06755 (NCTC13266_01349) - 1297636..1299369 (-) 1734 WP_002853967.1 flagellin A -
  EL221_RS06760 (NCTC13266_01350) - 1299452..1301278 (-) 1827 WP_002853842.1 motility associated factor glycosyltransferase family protein -
  EL221_RS06765 - 1301288..1302528 (-) 1241 Protein_1299 DUF2920 family protein -
  EL221_RS06770 (NCTC13266_01353) ctsG 1302528..1303043 (-) 516 WP_002853848.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  EL221_RS06775 (NCTC13266_01354) tsaD 1303044..1304051 (-) 1008 WP_002853625.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  EL221_RS06780 (NCTC13266_01356) - 1304048..1305443 (-) 1396 Protein_1302 M99 family carboxypeptidase catalytic domain-containing protein -
  EL221_RS06785 (NCTC13266_01357) dxr 1305445..1306515 (-) 1071 WP_002853864.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  EL221_RS06790 (NCTC13266_01358) cdsA 1306512..1307237 (-) 726 WP_002853616.1 phosphatidate cytidylyltransferase -
  EL221_RS06795 (NCTC13266_01359) - 1307246..1307584 (-) 339 WP_002852397.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18707.52 Da        Isoelectric Point: 5.7789

>NTDB_id=1123294 EL221_RS06770 WP_002853848.1 1302528..1303043(-) (ctsG) [Campylobacter jejuni strain NCTC13266]
MRKAFTILELVFVIIILGILAAIALPKMSSSKDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGN
FNGTKEVNFRVGDDKECLKLVFIDRADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGGM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=1123294 EL221_RS06770 WP_002853848.1 1302528..1303043(-) (ctsG) [Campylobacter jejuni strain NCTC13266]
ATGAGAAAAGCTTTTACTATATTAGAACTTGTTTTTGTGATCATTATTTTGGGAATTTTAGCCGCTATTGCTTTGCCAAA
AATGAGTTCAAGTAAGGATGAAGCTGAAGTTAGCAAGTCTTTAAACAACCTTAAAACTTTGATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGTGGGGTTGAAAATGTCGATCTTGGCAAT
TTCAATGGCACAAAAGAAGTAAATTTTCGCGTAGGCGATGATAAAGAATGCTTAAAACTTGTTTTTATAGATAGAGCGGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGCAAAAATGCTATCATTAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGTAATAAAGCTTGTGTGATTTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCGAGTAAAACTTATCTTTTAATAGGGGGAATGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

92.982

100

0.93

Multiple sequence alignment