Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   EL187_RS04670 Genome accession   NZ_LR134471
Coordinates   879784..880518 (-) Length   244 a.a.
NCBI ID   WP_039650263.1    Uniprot ID   -
Organism   Campylobacter insulaenigrae strain NCTC12927     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 874784..885518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL187_RS04630 (NCTC12927_00936) holA 875459..876424 (+) 966 WP_039650252.1 DNA polymerase III subunit delta -
  EL187_RS04635 (NCTC12927_00937) rpsF 876517..876891 (+) 375 WP_039650254.1 30S ribosomal protein S6 -
  EL187_RS04640 (NCTC12927_00938) - 876894..877427 (+) 534 WP_039650256.1 single-stranded DNA-binding protein -
  EL187_RS04645 (NCTC12927_00939) rpsR 877438..877698 (+) 261 WP_039618521.1 30S ribosomal protein S18 -
  EL187_RS04650 (NCTC12927_00940) - 877749..878384 (+) 636 WP_039650258.1 MarC family protein -
  EL187_RS04655 (NCTC12927_00941) - 878359..878793 (-) 435 WP_039650260.1 hypothetical protein -
  EL187_RS04660 (NCTC12927_00942) - 878887..879513 (-) 627 WP_052251975.1 type II secretion system protein -
  EL187_RS04665 (NCTC12927_00943) - 879494..879787 (-) 294 WP_039650262.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  EL187_RS04670 (NCTC12927_00944) proC 879784..880518 (-) 735 WP_039650263.1 pyrroline-5-carboxylate reductase Machinery gene
  EL187_RS04675 (NCTC12927_00945) fliW 880518..880916 (-) 399 WP_039650264.1 flagellar assembly protein FliW -
  EL187_RS04680 (NCTC12927_00946) bamD 881098..881754 (+) 657 WP_039650265.1 outer membrane protein assembly factor BamD -
  EL187_RS04685 (NCTC12927_00947) lon 881754..884132 (+) 2379 WP_039650266.1 endopeptidase La -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26796.30 Da        Isoelectric Point: 7.6590

>NTDB_id=1122905 EL187_RS04670 WP_039650263.1 879784..880518(-) (proC) [Campylobacter insulaenigrae strain NCTC12927]
MSEIYILGSGAMASALAKGLCDNYEVTIVARDITKNIISCSNIKIISYDEFNLEDKNIILAFKPYALDEVASKLSGKAKW
IISVLANTSFEKLHIIQAQNYVKIMPNIAAKFKASATPYLMEKLLFNDEILALLNTFGKAFLLQNEKEFDIAMVLSGCAP
AFLSLVAESLANAGVRNGLNNTLSYELTRSTFESFSVLFNKEHPALIKEKICSPAGVTIKGIEALEKKAVRAAFFEAFLA
SMNK

Nucleotide


Download         Length: 735 bp        

>NTDB_id=1122905 EL187_RS04670 WP_039650263.1 879784..880518(-) (proC) [Campylobacter insulaenigrae strain NCTC12927]
ATGTCTGAAATTTATATTTTGGGAAGTGGTGCTATGGCAAGTGCTTTAGCGAAAGGATTATGTGATAATTATGAGGTTAC
TATTGTTGCAAGAGATATTACTAAAAATATCATATCGTGTTCGAATATTAAAATCATTTCTTATGATGAATTTAATTTAG
AAGATAAAAATATAATTTTAGCTTTTAAACCTTATGCTTTAGATGAGGTAGCTAGTAAGTTATCAGGAAAGGCAAAATGG
ATAATTTCCGTTTTAGCAAACACTTCTTTTGAAAAACTCCATATTATACAAGCACAAAATTATGTAAAAATAATGCCCAA
TATTGCAGCAAAGTTTAAAGCTTCAGCAACTCCATATTTGATGGAAAAGCTATTATTTAATGATGAAATTTTAGCATTGT
TAAATACCTTTGGTAAAGCTTTTTTACTTCAAAATGAAAAAGAATTTGATATAGCAATGGTTCTAAGTGGTTGTGCGCCG
GCATTTTTGTCTTTAGTAGCAGAATCATTAGCTAATGCTGGAGTGAGGAATGGATTGAATAATACTTTAAGTTATGAATT
AACTAGATCGACTTTTGAAAGTTTTAGTGTATTATTTAATAAAGAACATCCTGCATTAATTAAGGAAAAGATTTGCTCTC
CTGCAGGAGTGACAATAAAAGGAATAGAAGCTTTAGAAAAAAAAGCTGTAAGAGCTGCATTTTTTGAAGCATTTTTGGCA
AGTATGAATAAATGA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(146-243)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-86)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

57.438

99.18

0.57

Multiple sequence alignment