Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | EL218_RS05850 | Genome accession | NZ_LR134441 |
| Coordinates | 1308924..1309577 (+) | Length | 217 a.a. |
| NCBI ID | WP_034719964.1 | Uniprot ID | - |
| Organism | Kaistella antarctica strain NCTC13489 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1303924..1314577
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL218_RS05835 (NCTC13489_01193) | aceA | 1304138..1305424 (-) | 1287 | WP_034719975.1 | isocitrate lyase | - |
| EL218_RS05840 (NCTC13489_01194) | aceB | 1305645..1307222 (-) | 1578 | WP_034719969.1 | malate synthase A | - |
| EL218_RS05845 (NCTC13489_01195) | - | 1307400..1308872 (+) | 1473 | WP_034719967.1 | helix-turn-helix domain-containing protein | - |
| EL218_RS05850 (NCTC13489_01196) | comF | 1308924..1309577 (+) | 654 | WP_034719964.1 | ComF family protein | Machinery gene |
| EL218_RS05855 (NCTC13489_01197) | upp | 1309721..1310371 (-) | 651 | WP_034719963.1 | uracil phosphoribosyltransferase | - |
| EL218_RS05860 (NCTC13489_01198) | - | 1310431..1310778 (-) | 348 | WP_034719962.1 | four helix bundle protein | - |
| EL218_RS05865 (NCTC13489_01199) | der | 1310838..1312145 (-) | 1308 | WP_034719960.1 | ribosome biogenesis GTPase Der | - |
| EL218_RS05870 (NCTC13489_01200) | - | 1312339..1312893 (+) | 555 | WP_034719958.1 | LemA family protein | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25225.43 Da Isoelectric Point: 8.7471
>NTDB_id=1122878 EL218_RS05850 WP_034719964.1 1308924..1309577(+) (comF) [Kaistella antarctica strain NCTC13489]
MFLVDLLFPNRCLQCNRIIHHDEVVCELCFNQIHFTHHHFLESNLLLEKCRLLFPLENALALMHFEDESVGQKIIHQLKY
GSRKKIGAILANWTAEKLDFNSLGVDLLVTVPLHPKKQKERGYNQLHLFADHLSKQLKIPCDHTLIKRNFYKKAQAKKNR
EQRIFNENLFSITKQISNQHVLLVDDVFTTGNTMSAVAWQILKEGNNKVSVLVMAMD
MFLVDLLFPNRCLQCNRIIHHDEVVCELCFNQIHFTHHHFLESNLLLEKCRLLFPLENALALMHFEDESVGQKIIHQLKY
GSRKKIGAILANWTAEKLDFNSLGVDLLVTVPLHPKKQKERGYNQLHLFADHLSKQLKIPCDHTLIKRNFYKKAQAKKNR
EQRIFNENLFSITKQISNQHVLLVDDVFTTGNTMSAVAWQILKEGNNKVSVLVMAMD
Nucleotide
Download Length: 654 bp
>NTDB_id=1122878 EL218_RS05850 WP_034719964.1 1308924..1309577(+) (comF) [Kaistella antarctica strain NCTC13489]
ATGTTTTTAGTAGACTTACTTTTTCCGAATCGATGTCTGCAATGCAATCGAATTATCCATCACGATGAAGTGGTATGCGA
ATTGTGTTTTAACCAGATTCATTTTACGCACCATCATTTTTTAGAAAGCAATCTTTTACTGGAAAAATGCCGTTTGCTCT
TCCCACTAGAAAATGCGCTTGCCTTGATGCACTTTGAAGATGAAAGTGTGGGTCAAAAGATTATCCATCAACTCAAATAT
GGCAGTCGCAAGAAAATCGGAGCGATTCTCGCCAACTGGACCGCTGAAAAATTAGATTTTAATTCTTTAGGAGTTGATCT
TTTGGTAACGGTTCCACTTCACCCAAAGAAACAGAAAGAGCGCGGATACAACCAACTGCATCTCTTTGCCGACCATCTTT
CTAAACAGTTAAAAATTCCATGTGACCACACCTTAATAAAGAGGAATTTTTACAAAAAAGCACAAGCGAAAAAAAATCGC
GAACAACGGATTTTCAACGAAAATTTATTTTCAATCACCAAACAAATTTCAAATCAACATGTTTTATTGGTCGATGATGT
TTTCACCACCGGAAATACCATGAGCGCTGTGGCGTGGCAAATACTGAAAGAAGGAAATAATAAAGTGAGTGTTCTGGTAA
TGGCAATGGATTAA
ATGTTTTTAGTAGACTTACTTTTTCCGAATCGATGTCTGCAATGCAATCGAATTATCCATCACGATGAAGTGGTATGCGA
ATTGTGTTTTAACCAGATTCATTTTACGCACCATCATTTTTTAGAAAGCAATCTTTTACTGGAAAAATGCCGTTTGCTCT
TCCCACTAGAAAATGCGCTTGCCTTGATGCACTTTGAAGATGAAAGTGTGGGTCAAAAGATTATCCATCAACTCAAATAT
GGCAGTCGCAAGAAAATCGGAGCGATTCTCGCCAACTGGACCGCTGAAAAATTAGATTTTAATTCTTTAGGAGTTGATCT
TTTGGTAACGGTTCCACTTCACCCAAAGAAACAGAAAGAGCGCGGATACAACCAACTGCATCTCTTTGCCGACCATCTTT
CTAAACAGTTAAAAATTCCATGTGACCACACCTTAATAAAGAGGAATTTTTACAAAAAAGCACAAGCGAAAAAAAATCGC
GAACAACGGATTTTCAACGAAAATTTATTTTCAATCACCAAACAAATTTCAAATCAACATGTTTTATTGGTCGATGATGT
TTTCACCACCGGAAATACCATGAGCGCTGTGGCGTGGCAAATACTGAAAGAAGGAAATAATAAAGTGAGTGTTCTGGTAA
TGGCAATGGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
49.77 |
100 |
0.498 |