Detailed information NTG1122589

Bioinformatically predicted

Overview

• Name: comF
• Type: Machinery gene
• Locus tag: EL260_RS21220
• Genome accession: NZ_LR134386
• Coordinates: 4716481..4717134 (+)
• Length: 217 a.a.
• NCBI ID: WP_123857496.1
• Uniprot ID: A0AAD0YP90
• Organism: Chryseobacterium nakagawai strain NCTC13529
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4711481..4722134

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL260_RS21205 (NCTC13529_04420)	aceA	4711840..4713120 (-)	1281	WP_123857493.1	isocitrate lyase	-
EL260_RS21210 (NCTC13529_04421)	aceB	4713239..4714813 (-)	1575	WP_123857494.1	malate synthase A	-
EL260_RS21215 (NCTC13529_04422)	-	4714941..4716413 (+)	1473	WP_123857495.1	helix-turn-helix domain-containing protein	-
EL260_RS21220 (NCTC13529_04423)	comF	4716481..4717134 (+)	654	WP_123857496.1	ComF family protein	Machinery gene
EL260_RS21225 (NCTC13529_04424)	-	4717271..4717957 (+)	687	WP_123857497.1	alpha/beta fold hydrolase	-
EL260_RS21230 (NCTC13529_04425)	upp	4717960..4718610 (-)	651	WP_123857498.1	uracil phosphoribosyltransferase	-

Sequence

Protein

• Length: 217 a.a.
• Molecular weight: 25391.23 Da
• Isoelectric Point: 7.0734

>NTDB_id=1122589 EL260_RS21220 WP_123857496.1 4716481..4717134(+) (comF) [Chryseobacterium nakagawai strain NCTC13529]
MILDLLFPNRCLHCNRIIEADLLVCDLCFGQIHFTHYDYTKNNPVKEQCQLFFPVENTYALIQFEEENLSRKIIHELKYR
NREITGKILAEWTCERLDFKDRKPDLFVSVPLHPKKQRERGYNQLHLYTETLSKYFEIPFDHELIKRNYYSKAQALKNKK
GRLETINTFSATQPITGKNILLIDDVFTTGTTISSIAWEVLNAGDNTVSVLVIAMDV

Nucleotide

• Length: 654 bp

>NTDB_id=1122589 EL260_RS21220 WP_123857496.1 4716481..4717134(+) (comF) [Chryseobacterium nakagawai strain NCTC13529]
ATGATATTGGACTTACTCTTTCCTAACCGATGCCTTCATTGTAACAGAATTATTGAAGCAGATCTTTTGGTTTGTGACCT
ATGCTTTGGTCAAATTCATTTTACCCATTATGACTACACCAAAAATAATCCAGTTAAAGAACAGTGCCAACTATTTTTTC
CTGTGGAGAATACGTATGCGCTTATACAGTTTGAGGAGGAAAACTTAAGTCGGAAAATCATTCATGAATTAAAATACAGA
AACAGGGAAATCACCGGAAAAATTTTAGCAGAATGGACGTGTGAACGATTGGATTTTAAAGATCGGAAACCTGATCTTTT
CGTAAGTGTTCCTCTTCACCCTAAAAAACAGAGAGAAAGAGGTTACAATCAGCTTCATTTATATACAGAAACTCTTTCAA
AATATTTTGAAATACCATTTGACCATGAATTAATCAAGAGAAACTATTATTCCAAAGCCCAAGCTCTAAAGAATAAAAAA
GGCAGATTGGAAACGATCAATACATTTTCAGCTACCCAACCTATAACTGGAAAAAATATTCTGCTCATTGATGATGTTTT
TACAACAGGAACTACGATTTCTTCTATTGCCTGGGAAGTACTCAATGCTGGTGATAATACGGTTAGTGTATTGGTGATAG
CAATGGATGTATAG

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (2-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comF	Riemerella anatipestifer ATCC 11845 = DSM 15868	50.463	99.539	0.502