Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   EL158_RS05155 Genome accession   NZ_LR134372
Coordinates   1011106..1011618 (-) Length   170 a.a.
NCBI ID   WP_027303797.1    Uniprot ID   -
Organism   Campylobacter upsaliensis strain NCTC11541     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1006106..1016618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL158_RS05135 (NCTC11541_01049) - 1007815..1008411 (+) 597 WP_027303793.1 MBL fold metallo-hydrolase -
  EL158_RS05140 (NCTC11541_01050) - 1008411..1008704 (+) 294 WP_027303794.1 hypothetical protein -
  EL158_RS05145 (NCTC11541_01051) - 1008691..1009881 (-) 1191 WP_126361521.1 DUF2920 family protein -
  EL158_RS05150 (NCTC11541_01052) - 1009871..1011109 (-) 1239 WP_027303796.1 DUF2920 family protein -
  EL158_RS05155 (NCTC11541_01053) ctsG 1011106..1011618 (-) 513 WP_027303797.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  EL158_RS05160 (NCTC11541_01054) tsaD 1011627..1012634 (-) 1008 WP_027303798.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  EL158_RS05165 (NCTC11541_01055) - 1012631..1014018 (-) 1388 Protein_1031 M99 family carboxypeptidase catalytic domain-containing protein -
  EL158_RS05170 (NCTC11541_01056) dxr 1013993..1015078 (-) 1086 WP_027303800.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  EL158_RS05175 (NCTC11541_01057) - 1015075..1015803 (-) 729 WP_027303801.1 phosphatidate cytidylyltransferase -
  EL158_RS05180 (NCTC11541_01058) - 1015815..1016192 (-) 378 WP_027303802.1 hypothetical protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18289.11 Da        Isoelectric Point: 6.3722

>NTDB_id=1122353 EL158_RS05155 WP_027303797.1 1011106..1011618(-) (ctsG) [Campylobacter upsaliensis strain NCTC11541]
MKKAFTILELVFVIIILGILAAIALPKLSSSKDEAEISKALNNLRTFINDVSIYALKNDKLANTKLLSNVSGVEEVDLSR
NLSDVAFKVGEDERCVEFVFVQGASFVLMGLSTNDNVKNAIKAVANGADESVLGNADFTSPSQNKACVALSKSENFKALA
NKTYLLLGTR

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1122353 EL158_RS05155 WP_027303797.1 1011106..1011618(-) (ctsG) [Campylobacter upsaliensis strain NCTC11541]
GTGAAAAAGGCTTTTACGATTTTAGAACTTGTTTTTGTGATTATAATACTTGGAATTTTAGCAGCTATTGCCCTGCCAAA
ACTTAGCTCTAGCAAAGATGAAGCGGAAATTAGCAAGGCTTTAAATAATCTTAGAACTTTTATCAATGATGTAAGTATTT
ATGCTCTTAAAAATGACAAACTTGCAAATACTAAACTTCTTAGCAATGTTAGTGGCGTGGAGGAGGTGGATTTGTCTAGA
AATTTGAGTGATGTGGCGTTTAAGGTGGGTGAGGATGAAAGGTGCGTGGAATTTGTCTTCGTGCAAGGAGCTAGTTTTGT
TTTAATGGGGCTTTCGACTAATGATAATGTTAAAAATGCCATTAAAGCGGTAGCAAATGGAGCCGATGAGAGCGTTTTGG
GTAATGCTGATTTTACAAGCCCCTCTCAAAATAAAGCTTGTGTGGCTTTAAGCAAAAGTGAAAATTTTAAGGCTTTGGCA
AATAAAACTTATTTATTACTAGGCACGAGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

62.941

100

0.629

Multiple sequence alignment