Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EL198_RS09965 Genome accession   NZ_LR134369
Coordinates   2209674..2211503 (-) Length   609 a.a.
NCBI ID   WP_007055050.1    Uniprot ID   A0AA87IH45
Organism   Bifidobacterium longum strain NCTC11818     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2201233..2226078 2209674..2211503 within 0


Gene organization within MGE regions


Location: 2201233..2226078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL198_RS09920 (NCTC11818_01932) metG 2202162..2204027 (-) 1866 WP_032737588.1 methionine--tRNA ligase -
  EL198_RS09930 (NCTC11818_01933) - 2204344..2204991 (+) 648 WP_007052934.1 hypothetical protein -
  EL198_RS11085 - 2204982..2205359 (+) 378 WP_007052935.1 hypothetical protein -
  EL198_RS09940 (NCTC11818_01934) rsmI 2205386..2206396 (-) 1011 WP_008783206.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  EL198_RS09955 (NCTC11818_01936) - 2206976..2208394 (-) 1419 WP_050496093.1 MFS transporter -
  EL198_RS09960 (NCTC11818_01937) - 2208476..2209522 (+) 1047 WP_032740908.1 FAD:protein FMN transferase -
  EL198_RS09965 (NCTC11818_01938) rcrQ 2209674..2211503 (-) 1830 WP_007055050.1 ABC transporter ATP-binding protein Regulator
  EL198_RS09975 (NCTC11818_01939) rcrP 2211717..2213588 (-) 1872 WP_013582997.1 ABC transporter ATP-binding protein Regulator
  EL198_RS09985 (NCTC11818_01940) - 2213775..2214296 (-) 522 WP_016507763.1 MarR family winged helix-turn-helix transcriptional regulator -
  EL198_RS09990 (NCTC11818_01941) - 2214658..2215251 (+) 594 WP_013582999.1 BRO family protein -
  EL198_RS09995 (NCTC11818_01942) - 2215707..2219543 (-) 3837 WP_013583000.1 bacterial Ig-like domain-containing protein -
  EL198_RS10000 (NCTC11818_01943) - 2219755..2224296 (-) 4542 WP_013583001.1 exo-beta-1,6-galactobiohydrolase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 66670.07 Da        Isoelectric Point: 6.2412

>NTDB_id=1122341 EL198_RS09965 WP_007055050.1 2209674..2211503(-) (rcrQ) [Bifidobacterium longum strain NCTC11818]
MPRGPMGGRRAVEKPHDFGKVMGKLVNYCRNYLPVIIIALILGAAGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMNS
VDFGTVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSVTLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMAIMKSSQKYFARQQMALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFEKYNSDLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALDGQIEFGVIVAFMMYVRLFTQPL
AQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKSALLGTNGHEVKGDVEFSHVQFGYEPGKPIIHDFSASVKAGQKVA
IVGPTGAGKTTMVNLLMRFYEISGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENIAYSKPGVTDKQIEDAC
KAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTSFVI
AHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=1122341 EL198_RS09965 WP_007055050.1 2209674..2211503(-) (rcrQ) [Bifidobacterium longum strain NCTC11818]
ATGCCAAGAGGACCAATGGGCGGCAGGCGTGCCGTCGAAAAGCCCCATGATTTCGGCAAAGTCATGGGCAAACTCGTGAA
CTACTGCCGCAACTATCTTCCCGTCATCATCATCGCGCTCATCCTGGGCGCGGCCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGTCTGCCCGCCATCGTTAACGGCAGACCGGTGATGAACTCG
GTAGATTTCGGCACGGTGGGCCACATCGCCTGGACTTTGGTGGCCCTGTACGTGGGCTACGCCGTGCTCGGCTACGTGCA
AAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGACTGCGCGAGTCCATCTCGGTCAAAATCAACAAACTGC
CGCTCAAATACTTCGACAAGGTTAGCTACGGCGACGTGCTGTCGCGCATAACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGCCAGTCGCTCGGCTCGCTGATTACCTCGGTGACGCTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGCCATCATGAAGTCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGATGGCGCTGGGTGACGTCAACGGCCACGTGGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCATACAACGGCGAGGCCGATTCGATTCGTCGCTTCGAGAAGTACAACTCGGACCTCTACGAGTCCGGCTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAATTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCGCTCGACGGGCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTATGTCCGCCTGTTCACCCAGCCGTTG
GCGCAGTTCGCCCAGGCCTTCCAGAACCTGCAGCGTTGCGCGGCGGCCGCCGAACGCGTGTTCGGCTTCCTTGAGGAGCC
GGAGATGGAGGACGAATCCGGCAAGTCCGCTTTGCTTGGGACCAACGGCCACGAAGTGAAGGGCGACGTGGAATTCAGCC
ACGTACAGTTCGGCTACGAACCGGGCAAGCCGATCATCCACGACTTCTCCGCCTCCGTCAAGGCCGGGCAGAAGGTTGCC
ATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTCATGCGCTTCTATGAGATTTCCGGCGGCTCGAT
CGCGATCGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGCTGCAGGATACGT
GGGTGTTCCGCGGCACTGTGCGCGAGAACATCGCCTACTCCAAGCCCGGCGTGACCGACAAGCAGATCGAGGATGCGTGC
AAGGCCGTGGGCCTCGACCACTTCATCCGCTCGCTGCCGGACGGCTATGACACCGTGCTCGACGACAAGTCGTCGCTCTC
CCAGGGCCAGAAGCAGCTGCTGACCATCGCCCGCGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACGAGGCCACCT
CCTCGGTCGATACCCGTACTGAAGAGCTGATTCAGAAGGCCATGGATGCGCTGACCGTGGGCCGTACGAGCTTTGTGATC
GCGCATCGCCTCTCCACGATTCGCGACGCCGACATGATCCTCGTCATGAACCACGGCGACGTGATCGAGCGCGGCACGCA
CGACGAACTGCTGGCGGCGGGCGGTTTTTACGCCGACCTCTACAACAGCCAGTTCGCGCTCGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(37-320)

ABC transporter (ABC_tran)

(387-534)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.53

96.059

0.524

Multiple sequence alignment