Detailed information NTG1122252

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: EL167_RS06225
• Genome accession: NZ_LR134360
• Coordinates: 1346416..1348836 (+)
• Length: 806 a.a.
• NCBI ID: WP_047131822.1
• Uniprot ID: A0A143P8G5
• Organism: Staphylococcus condimenti strain NCTC13827
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1341416..1353836

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL167_RS12890 (NCTC13827_01287)	-	1341722..1341886 (+)	165	WP_156483151.1	hypothetical protein	-
EL167_RS06200 (NCTC13827_01288)	-	1341960..1342166 (+)	207	WP_047131827.1	CsbD family protein	-
EL167_RS06205 (NCTC13827_01289)	-	1342202..1343200 (-)	999	WP_047131826.1	LLM class flavin-dependent oxidoreductase	-
EL167_RS06210 (NCTC13827_01290)	-	1343382..1344521 (+)	1140	WP_047131825.1	cysteine desulfurase family protein	-
EL167_RS06215 (NCTC13827_01291)	mnmA	1344524..1345636 (+)	1113	WP_047131824.1	tRNA 2-thiouridine(34) synthase MnmA	-
EL167_RS06220 (NCTC13827_01292)	-	1345744..1346412 (+)	669	WP_047131823.1	lipopolysaccharide assembly protein LapB	-
EL167_RS06225 (NCTC13827_01293)	recD2	1346416..1348836 (+)	2421	WP_047131822.1	ATP-dependent RecD-like DNA helicase	Machinery gene
EL167_RS06230 (NCTC13827_01295)	alaS	1349144..1351774 (+)	2631	WP_047131821.1	alanine--tRNA ligase	-
EL167_RS06235 (NCTC13827_01296)	-	1351843..1352106 (+)	264	WP_047131820.1	IreB family regulatory phosphoprotein	-
EL167_RS06240 (NCTC13827_01297)	ruvX	1352109..1352537 (+)	429	WP_047131819.1	Holliday junction resolvase RuvX	-
EL167_RS06245 (NCTC13827_01298)	-	1352560..1352871 (+)	312	WP_047131818.1	DUF1292 domain-containing protein	-
EL167_RS06250 (NCTC13827_01299)	-	1353159..1353800 (+)	642	WP_047131817.1	O-methyltransferase	-

Sequence

Protein

• Length: 806 a.a.
• Molecular weight: 90919.16 Da
• Isoelectric Point: 4.4085

>NTDB_id=1122252 EL167_RS06225 WP_047131822.1 1346416..1348836(+) (recD2) [Staphylococcus condimenti strain NCTC13827]
MSNPTLFDYSMVKGTVEAILFQNKENFYTVLKVDPIETNEEFDSMPTVVGFFPEIAEGDVYTFKGQAVTHPRYGKQLKAE
TFEKELPQTKDAIVSYLSSDLFKGIGKKTAENIVDTLGENAINKILDDEQVLAEVPHLSKKKQKQIAEQIYSNQEVEKIM
IRLHDLGFGPKLSMNIYQVYQVETLTEIEKNPYQLVYDVKGVGFNKADTLAKNLGIEYNDPERLKAGLLYTIEEECIKQG
HTYLPKDYVIEASQDTLSQVHSESIDAQLLEEMIVQLTEEEKLVEADETLSVPSLYYSEVKSVQNLYRIEAHQTKLETIE
QSDLQIHIGEIEDVNNVNYAASQKEALETAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPVALA
APTGRAAKRLQESTGLEAMTIHRLIGWSQETKPEDVLENEINAKLIIIDEMSMVDTWLFHQFLNAVPIDAQVILVGDEDQ
LPSVGPGQVFKDLIDSKVVPRVNLTEVYRQQDGSSIIELAHKMKLGQPIDITQRFHDRSFIPCSADQIPDVVNKVVTSAV
KKGYDMSDIQVLAPMYRGSAGIKRLNKVLQDILNPKQEDTREIEFGDVVFRKGDKVLQLVNRPSDNIFNGDIGVIQGIFW
AKENELNKDVLVVDFDGNEITFTKQDMMELTHAYCTSIHKAQGSEFPIVIMPVVKQYYRMLQRPIIYTGLTRAKQSLVFL
GDSQAFDIGMQTYGQVRMTRMAQLLRDYFGTEMSETTNETENDIDTNEIIAEQNSKVIALSEETIFEIDPMIGMGNVTPY
SFANDK

Nucleotide

• Length: 2421 bp

>NTDB_id=1122252 EL167_RS06225 WP_047131822.1 1346416..1348836(+) (recD2) [Staphylococcus condimenti strain NCTC13827]
TTGAGCAACCCTACATTATTTGATTATTCAATGGTCAAAGGTACAGTTGAAGCTATTCTTTTTCAAAATAAAGAAAACTT
TTACACTGTATTAAAAGTAGATCCAATCGAGACAAATGAAGAATTTGATAGTATGCCGACCGTTGTAGGGTTCTTTCCTG
AAATTGCGGAAGGAGATGTTTATACTTTTAAAGGTCAAGCTGTCACTCACCCTCGATATGGCAAGCAATTAAAAGCTGAG
ACCTTTGAAAAAGAACTGCCGCAAACTAAAGATGCGATTGTAAGTTATCTCTCAAGTGATTTATTTAAAGGCATCGGGAA
AAAAACAGCAGAAAATATCGTCGACACACTTGGTGAAAATGCGATTAATAAAATTCTTGATGATGAACAAGTATTGGCAG
AAGTACCGCATCTGTCTAAGAAAAAGCAAAAACAAATTGCAGAACAAATTTACAGTAATCAAGAAGTTGAAAAAATCATG
ATTCGTCTGCATGATTTAGGTTTCGGTCCTAAATTATCGATGAATATTTACCAAGTTTACCAAGTTGAAACACTCACTGA
AATTGAGAAGAATCCGTATCAGCTTGTCTATGATGTTAAAGGGGTCGGTTTTAATAAAGCTGATACTTTAGCTAAGAATC
TTGGTATTGAATACAATGATCCTGAACGATTAAAAGCAGGATTATTATATACAATTGAGGAAGAATGTATTAAACAAGGA
CATACGTATTTGCCGAAAGATTATGTGATTGAAGCTTCACAAGATACTTTATCTCAAGTGCATAGCGAATCCATTGATGC
CCAATTGTTGGAAGAGATGATTGTACAGCTGACTGAAGAAGAAAAGTTGGTAGAAGCAGATGAAACACTTTCTGTACCAA
GTTTATATTATTCAGAAGTTAAAAGTGTACAAAATTTATATCGCATTGAAGCACATCAAACAAAACTAGAGACAATTGAA
CAATCAGACCTGCAGATACACATTGGAGAAATTGAAGATGTCAATAATGTAAATTATGCTGCATCTCAAAAAGAAGCACT
TGAAACTGCTATAAATTCTAAAGTCATGCTGTTAACAGGCGGGCCTGGTACAGGTAAAACAACTGTGATTAAAGGTATTG
TAGAATTATATGCTGAAATCCATGGTCTGTCTCTTGATTATGATGATTATAACGAAGATGATTATCCTGTCGCTTTAGCA
GCACCAACAGGCCGAGCTGCTAAAAGATTGCAAGAATCTACGGGATTAGAAGCTATGACGATACATCGATTAATCGGTTG
GAGCCAAGAAACAAAACCAGAAGACGTTCTTGAAAATGAAATCAACGCTAAGCTGATTATTATCGACGAAATGTCTATGG
TCGACACATGGCTGTTCCACCAATTTTTAAATGCCGTTCCAATTGATGCGCAAGTCATCTTAGTAGGAGATGAAGATCAA
TTACCTTCAGTAGGTCCAGGGCAAGTATTTAAAGATTTAATTGATTCTAAAGTAGTGCCGCGTGTGAATCTAACTGAAGT
TTATCGCCAACAAGACGGTTCTAGTATTATTGAATTAGCACATAAAATGAAACTGGGACAGCCAATTGATATTACACAAC
GATTTCATGATCGCAGTTTTATACCATGCAGTGCCGATCAAATACCGGATGTAGTTAATAAAGTGGTAACCTCAGCTGTG
AAAAAAGGTTATGATATGAGTGATATTCAAGTACTTGCACCGATGTACAGAGGCAGTGCTGGTATTAAGCGTCTGAATAA
AGTACTTCAAGACATTTTAAATCCTAAACAAGAAGATACACGTGAAATCGAATTCGGAGATGTTGTTTTTCGAAAAGGCG
ATAAAGTACTGCAATTAGTTAATCGACCAAGCGATAATATTTTTAACGGAGATATTGGCGTCATTCAAGGTATCTTTTGG
GCAAAAGAAAATGAATTGAATAAAGATGTGTTAGTCGTTGATTTTGATGGAAATGAAATTACATTTACCAAACAAGATAT
GATGGAACTTACGCATGCTTATTGTACTTCCATTCATAAAGCGCAAGGTTCAGAGTTTCCAATTGTGATAATGCCGGTAG
TCAAACAATATTACCGCATGCTGCAAAGACCGATTATTTATACAGGATTAACGCGAGCTAAACAATCTTTAGTTTTTCTA
GGCGACAGTCAAGCCTTTGATATTGGTATGCAAACCTATGGTCAAGTGCGGATGACACGTATGGCACAGCTATTGCGCGA
TTATTTCGGTACAGAAATGAGCGAAACAACAAATGAAACAGAAAATGATATAGATACAAACGAGATAATTGCAGAACAAA
ATTCAAAAGTCATTGCGTTATCAGAAGAAACAATATTTGAAATTGACCCGATGATTGGAATGGGTAATGTCACACCTTAT
AGTTTCGCGAATGATAAATAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (339-544)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-719)

3D structure

• AlphaFold DB: A0A143P8G5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	51.365	100	0.514