Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   EL268_RS20225 Genome accession   NZ_LR134338
Coordinates   4199671..4201932 (-) Length   753 a.a.
NCBI ID   WP_106656728.1    Uniprot ID   A0A542SGX5
Organism   Brevibacillus brevis strain NCTC2611     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4194671..4206932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL268_RS20200 (NCTC2611_04141) - 4196408..4197472 (-) 1065 WP_106656725.1 AI-2E family transporter -
  EL268_RS20205 (NCTC2611_04143) - 4197853..4198539 (+) 687 WP_106656726.1 TerC family protein -
  EL268_RS20210 - 4198656..4198850 (-) 195 WP_232030579.1 hypothetical protein -
  EL268_RS20215 (NCTC2611_04144) - 4198878..4199084 (-) 207 WP_007717618.1 hypothetical protein -
  EL268_RS20220 (NCTC2611_04145) - 4199117..4199596 (-) 480 WP_017247593.1 PRC-barrel domain-containing protein -
  EL268_RS20225 (NCTC2611_04146) recD2 4199671..4201932 (-) 2262 WP_106656728.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EL268_RS33455 (NCTC2611_04147) - 4202014..4202769 (-) 756 WP_232029957.1 methyl-accepting chemotaxis protein -
  EL268_RS33460 (NCTC2611_04148) - 4202739..4203674 (-) 936 WP_232029959.1 methyl-accepting chemotaxis protein -
  EL268_RS20235 (NCTC2611_04149) - 4203844..4204989 (-) 1146 WP_106656729.1 cysteine desulfurase family protein -
  EL268_RS20240 (NCTC2611_04150) cymR 4205200..4205619 (-) 420 WP_106656730.1 cysteine metabolism transcriptional regulator CymR -
  EL268_RS32885 - 4205717..4205890 (+) 174 WP_164724499.1 hypothetical protein -

Sequence

Protein


Download         Length: 753 a.a.        Molecular weight: 85216.44 Da        Isoelectric Point: 5.0699

>NTDB_id=1121945 EL268_RS20225 WP_106656728.1 4199671..4201932(-) (recD2) [Brevibacillus brevis strain NCTC2611]
MDEQQSISLFAETYIRGFVSQEIFYKEETWYGVIRLKIEETTESIKESEVIIVGNFPRPHPDELYTFYGEWKTHPRFGQQ
YVAKRYERETPKTLAGVERYLASGLFQGIGKKMAKRIVEQLGVDALSIIADFPERLAEVPGISEQRAKTIYDSVVEHRSL
ESAMVFLYDFGIGVNMALRIYQTYKLETMTVLKEEPYRLIEDVVGIGFKRADDIARATGIAASSEERVKAAALFVLQEAS
YSEGHVYLPVEELCEKTLRLLEECGGHDFSGDDIQLAVEALFVSSKIAWEDERVYLPSLFFAELGLAKRLRHFAARDEFG
TFPTSEFYRALGAVEDELGITYAQTQRDAIEQAIKAGLMLLTGGPGTGKTTVIRGICRVFSQLHGLSLDLKKYNEENPFP
IVLVAPTGRAAKRMTETTGLPAMTIHRLLGYKGESFEHDAEHPIRGRLLIVDEMSMVDIWLANQLFRAVPDDMQIIMVGD
PDQLPSVGPGNVLLDMIRSGLLPLVQLTEIYRQAEESTIIRLAHDVRKGNVPADLLHTTPDRRFFTSLPQEVPEAVKQIC
FGAVKKGYTAKDVQVLAPIYKGNAGVNRLNEELQELFNPKTPQKREVTFGETTFRTGDKVLQLVNNAEEQVFNGDMGEIV
AIFFPNENAENQEMLVAAFDNREVVYKRSDYHQLTLAYCCSVHKSQGSEFPIVIMPFVKSYYRMLRRKLVYTGITRSKSF
LIMCGEPDAFRAAVESDEEGVRYSYLEERLKQE

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=1121945 EL268_RS20225 WP_106656728.1 4199671..4201932(-) (recD2) [Brevibacillus brevis strain NCTC2611]
ATGGACGAGCAGCAGTCAATCTCGCTGTTTGCGGAAACCTACATTCGAGGATTTGTTTCTCAAGAAATTTTTTACAAGGA
AGAAACCTGGTACGGAGTTATCCGTCTTAAGATAGAAGAGACTACCGAATCGATTAAAGAATCGGAGGTCATTATTGTCG
GTAATTTTCCTCGCCCGCATCCAGATGAGCTGTACACCTTTTACGGTGAATGGAAGACACACCCTCGTTTTGGCCAGCAG
TACGTAGCAAAGCGCTATGAACGTGAAACGCCGAAAACATTGGCCGGGGTTGAGCGATACTTAGCCAGTGGTTTGTTTCA
AGGGATCGGAAAGAAGATGGCCAAACGGATTGTCGAGCAGCTCGGTGTAGATGCGCTATCGATTATCGCGGACTTCCCGG
AGCGATTGGCTGAGGTACCAGGCATTTCTGAACAACGTGCCAAAACGATCTATGATTCTGTAGTCGAGCATCGTTCCTTG
GAAAGTGCCATGGTTTTCTTGTACGACTTCGGCATTGGTGTGAACATGGCGCTGCGTATTTATCAGACCTATAAGCTGGA
AACGATGACTGTGCTGAAGGAAGAGCCTTACCGGTTGATTGAGGATGTCGTGGGAATCGGCTTTAAGCGGGCAGATGACA
TTGCACGAGCTACTGGAATCGCTGCTTCCTCAGAAGAACGTGTGAAGGCGGCGGCTCTCTTTGTCTTGCAGGAGGCTTCG
TATTCAGAAGGACATGTTTATTTGCCTGTGGAGGAGCTCTGTGAAAAAACGCTGCGCCTTCTCGAAGAGTGCGGGGGGCA
CGACTTTTCTGGAGACGATATTCAACTGGCAGTGGAAGCCCTGTTTGTGTCGAGCAAAATTGCCTGGGAAGATGAGCGGG
TGTATTTGCCCTCATTGTTTTTTGCCGAGCTCGGTCTTGCCAAAAGACTGCGTCACTTCGCTGCGCGGGATGAATTCGGT
ACGTTCCCGACTTCGGAGTTTTACCGTGCGTTAGGGGCGGTCGAGGATGAGCTGGGGATTACGTATGCCCAGACGCAGCG
TGATGCCATTGAACAGGCGATCAAAGCAGGTCTGATGCTTTTGACAGGGGGACCTGGTACGGGGAAAACGACAGTCATTC
GTGGGATTTGTCGTGTTTTTTCTCAGCTTCATGGATTGTCTCTGGACTTGAAAAAATACAACGAAGAAAATCCGTTCCCG
ATCGTTCTTGTGGCTCCTACTGGACGTGCAGCAAAACGGATGACAGAGACTACGGGTTTACCAGCAATGACCATCCATCG
CTTGCTCGGTTACAAAGGGGAGAGCTTCGAGCATGACGCGGAGCATCCAATCCGTGGCCGGCTATTAATTGTGGATGAAA
TGTCCATGGTCGATATCTGGTTAGCAAATCAATTGTTTCGTGCGGTCCCGGATGACATGCAGATCATCATGGTAGGAGAC
CCTGACCAGTTGCCGTCCGTAGGACCAGGCAACGTCCTGCTGGATATGATTCGATCTGGATTGTTACCGTTGGTACAGCT
GACAGAAATTTATCGGCAAGCAGAAGAGTCCACTATTATTCGGTTGGCCCATGATGTACGCAAGGGGAATGTACCGGCAG
ATTTGCTTCACACCACCCCGGATCGGCGATTCTTCACAAGTTTGCCACAAGAAGTTCCGGAAGCAGTGAAACAAATTTGC
TTCGGAGCCGTAAAAAAAGGATATACGGCAAAAGATGTTCAGGTATTAGCCCCTATCTATAAAGGTAATGCCGGTGTGAA
CCGGTTGAATGAAGAATTGCAGGAGCTGTTTAATCCGAAAACGCCGCAAAAGCGTGAAGTTACTTTCGGAGAGACGACTT
TCCGTACAGGAGACAAGGTCCTGCAATTGGTGAACAATGCTGAAGAACAGGTGTTTAACGGTGACATGGGTGAGATCGTC
GCCATCTTTTTCCCGAATGAAAATGCGGAGAACCAGGAGATGCTGGTCGCTGCCTTTGATAACAGGGAAGTGGTGTACAA
GCGTTCGGATTATCATCAGCTGACGCTTGCCTACTGCTGCTCGGTTCATAAGTCTCAAGGCAGCGAATTTCCGATTGTGA
TCATGCCGTTTGTCAAAAGCTACTACCGTATGCTCAGACGTAAGCTGGTCTATACCGGGATTACCCGGAGCAAATCATTC
CTCATCATGTGTGGAGAGCCGGATGCGTTCCGTGCAGCTGTAGAGTCTGATGAGGAGGGGGTTCGGTACAGTTACCTGGA
AGAACGGCTAAAGCAAGAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

AAA domain (AAA_30)

(342-535)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-723)

Helix-hairpin-helix domain (HHH_5)

(107-152)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-656)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A542SGX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

48.93

99.336

0.486

Multiple sequence alignment