Detailed information NTG1121507

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: EL133_RS01000
• Genome accession: NZ_LR134323
• Coordinates: 197351..198283 (+)
• Length: 310 a.a.
• NCBI ID: WP_006740482.1
• Uniprot ID: G5KHM0
• Organism: Streptococcus urinalis strain NCTC13766
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 192351..203283

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL133_RS00980 (NCTC13766_00194)	-	192603..194261 (+)	1659	WP_006739225.1	peptide ABC transporter substrate-binding protein	-
EL133_RS00985 (NCTC13766_00195)	-	194338..195252 (+)	915	WP_006738677.1	ABC transporter permease	-
EL133_RS00990 (NCTC13766_00196)	-	195262..196293 (+)	1032	WP_006739317.1	ABC transporter permease	-
EL133_RS00995 (NCTC13766_00197)	oppD	196305..197351 (+)	1047	WP_006739927.1	ABC transporter ATP-binding protein	Regulator
EL133_RS01000 (NCTC13766_00198)	amiF	197351..198283 (+)	933	WP_006740482.1	ABC transporter ATP-binding protein	Regulator
EL133_RS01005 (NCTC13766_00199)	rnjA	198363..200045 (-)	1683	WP_037595741.1	ribonuclease J1	-
EL133_RS01010 (NCTC13766_00200)	-	200109..200339 (-)	231	WP_006739448.1	DNA-dependent RNA polymerase subunit epsilon	-
EL133_RS01015 (NCTC13766_00201)	tsaB	200633..201322 (+)	690	WP_006740221.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
EL133_RS01020 (NCTC13766_00202)	rimI	201324..201740 (+)	417	WP_006739546.1	ribosomal protein S18-alanine N-acetyltransferase	-
EL133_RS01025 (NCTC13766_00203)	tsaD	201754..202779 (+)	1026	WP_006740222.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 34973.89 Da
• Isoelectric Point: 6.5822

>NTDB_id=1121507 EL133_RS01000 WP_006740482.1 197351..198283(+) (amiF) [Streptococcus urinalis strain NCTC13766]
MTKTGKKLVELKNVSLSFNKGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINGGEIDFDGRQVSKL
KGKELHEFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHNLVKSKAERDDKVQELLHLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVNPKFIIADEPISALDVSIQAQVVSLMQKLQEEQGLTYLFIAHDLSMVKYISDRIGVMHWGKILEIGSSED
VYHHPIHPYTKSLLSAIPEPDPEKERQRVAQVYDPSQELDGQEREMREITPGHFVLSTVEEAELYKSQQK

Nucleotide

• Length: 933 bp

>NTDB_id=1121507 EL133_RS01000 WP_006740482.1 197351..198283(+) (amiF) [Streptococcus urinalis strain NCTC13766]
ATGACTAAAACTGGTAAAAAATTAGTTGAACTTAAAAATGTGTCTTTAAGCTTTAACAAAGGCAAAAAGAACGAAGTCAA
AGCTATTGATAATGTAAGTTTTGATATCTACGAAGGAGAAGTTTTCGGTCTTGTTGGTGAATCAGGTTCTGGTAAAACAA
CAGTCGGTCGTGCTATCTTAAAACTCTATGATATCAATGGTGGCGAAATAGACTTTGATGGTAGACAAGTTTCAAAACTT
AAAGGTAAAGAATTACACGAATTTCGTAAAGATGCTCAAATGATTTTCCAAGACCCTCAAGCTAGTTTGAATGGTCGTAT
GAAAATTAGAGATATTGTTGCCGAAGGTTTGGATATTCATAATCTCGTGAAATCAAAAGCTGAACGTGACGATAAAGTAC
AAGAGTTACTTCACTTGGTTGGCCTAAATAAGGACCATTTAACAAGATATCCGCATGAGTTTTCTGGTGGTCAACGTCAA
CGTATTGGTATTGCTAGGGCTTTAGCTGTGAATCCTAAATTTATCATTGCAGATGAACCAATTTCAGCACTTGATGTGTC
AATTCAAGCACAAGTTGTAAGTTTGATGCAAAAATTGCAAGAAGAACAAGGTTTAACTTATCTTTTTATTGCTCATGACT
TGTCAATGGTAAAATATATTTCTGATCGTATTGGTGTTATGCATTGGGGTAAAATACTAGAGATTGGGTCTTCAGAAGAT
GTTTATCACCATCCAATTCACCCATATACAAAGAGTCTTTTATCTGCTATTCCAGAACCAGATCCAGAAAAAGAAAGACA
ACGTGTTGCACAGGTTTATGATCCAAGTCAAGAACTTGATGGACAAGAACGTGAAATGCGTGAAATCACACCAGGACATT
TTGTCTTATCTACTGTGGAAGAAGCTGAACTTTATAAGAGTCAACAAAAATAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-266)

3D structure

• AlphaFold DB: G5KHM0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	55.882	98.71	0.552
amiF	Streptococcus thermophilus LMG 18311	55.556	98.71	0.548
amiF	Streptococcus salivarius strain HSISS4	54.902	98.71	0.542