Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   EL130_RS06210 Genome accession   NZ_LR134320
Coordinates   1235603..1237405 (+) Length   600 a.a.
NCBI ID   WP_002283869.1    Uniprot ID   -
Organism   Streptococcus mutans strain NCTC10832     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1207804..1239149 1235603..1237405 within 0


Gene organization within MGE regions


Location: 1207804..1239149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL130_RS06095 (NCTC10832_01174) galE 1207867..1208868 (+) 1002 WP_002262881.1 UDP-glucose 4-epimerase GalE -
  EL130_RS06100 (NCTC10832_01175) - 1209136..1210215 (+) 1080 WP_002262882.1 serine hydrolase domain-containing protein -
  EL130_RS06105 (NCTC10832_01176) - 1210458..1210961 (+) 504 WP_002265100.1 phosphatase PAP2 family protein -
  EL130_RS06110 (NCTC10832_01177) - 1211124..1211729 (+) 606 WP_002265101.1 TetR/AcrR family transcriptional regulator -
  EL130_RS06115 (NCTC10832_01178) - 1211804..1212520 (+) 717 WP_002265102.1 ABC transporter ATP-binding protein -
  EL130_RS06120 (NCTC10832_01179) - 1212507..1214048 (+) 1542 WP_002265103.1 hypothetical protein -
  EL130_RS06125 (NCTC10832_01180) - 1214157..1214531 (+) 375 WP_002262891.1 DUF1149 family protein -
  EL130_RS06130 (NCTC10832_01181) - 1214537..1215382 (+) 846 WP_002266545.1 DegV family protein -
  EL130_RS06135 (NCTC10832_01182) dapB 1215394..1216161 (+) 768 WP_002262893.1 4-hydroxy-tetrahydrodipicolinate reductase -
  EL130_RS06140 (NCTC10832_01183) - 1216158..1217363 (+) 1206 WP_002266717.1 CCA tRNA nucleotidyltransferase -
  EL130_RS06145 (NCTC10832_01184) - 1217366..1219234 (+) 1869 WP_002266716.1 ABC-F family ATP-binding cassette domain-containing protein -
  EL130_RS06150 (NCTC10832_01185) - 1219690..1221426 (+) 1737 WP_002283683.1 ABC transporter ATP-binding protein -
  EL130_RS06155 (NCTC10832_01186) - 1221437..1223209 (+) 1773 WP_002283302.1 ABC transporter ATP-binding protein -
  EL130_RS06160 (NCTC10832_01187) - 1223325..1224245 (+) 921 WP_002269023.1 AEC family transporter -
  EL130_RS06165 (NCTC10832_01188) gtfD 1224465..1228853 (+) 4389 WP_126475463.1 glucosyltransferase-S -
  EL130_RS06170 (NCTC10832_01189) - 1229075..1229581 (-) 507 WP_002283300.1 DUF308 domain-containing protein -
  EL130_RS06175 (NCTC10832_01190) gdhA 1230348..1231697 (+) 1350 WP_002283872.1 NADP-specific glutamate dehydrogenase -
  EL130_RS06180 (NCTC10832_01191) - 1231809..1232192 (-) 384 WP_002265142.1 DUF3021 family protein -
  EL130_RS06185 (NCTC10832_01192) queF 1232301..1232789 (-) 489 WP_002265143.1 preQ(1) synthase -
  EL130_RS06190 (NCTC10832_01193) queE 1232802..1233518 (-) 717 WP_002283871.1 7-carboxy-7-deazaguanine synthase QueE -
  EL130_RS06195 (NCTC10832_01194) queD 1233515..1233961 (-) 447 WP_002266457.1 6-carboxytetrahydropterin synthase QueD -
  EL130_RS06200 (NCTC10832_01195) queC 1233961..1234614 (-) 654 WP_002283870.1 7-cyano-7-deazaguanine synthase QueC -
  EL130_RS06205 (NCTC10832_01196) rcrR 1235165..1235599 (+) 435 WP_002263292.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  EL130_RS06210 (NCTC10832_01197) rcrP 1235603..1237405 (+) 1803 WP_002283869.1 ABC transporter ATP-binding protein Regulator
  EL130_RS06215 (NCTC10832_01198) rcrQ 1237395..1239149 (+) 1755 WP_002275251.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 66939.76 Da        Isoelectric Point: 9.7258

>NTDB_id=1121432 EL130_RS06210 WP_002283869.1 1235603..1237405(+) (rcrP) [Streptococcus mutans strain NCTC10832]
MFKIFKRLNAKEWGMVLLSTAFICLAVWMDLKTPEYMSNITTLLQTKGTTASDIMDPGSKMLMFSFGSFFMAVLVGFLAS
RTAASFTTRLRSDIFNRVMDYSEAEIKKFSIPSLLTRTTNDLTQLQIMIVMGMQVVTRGPIMAVWALTKIWGKSDEWTGA
VGVAVLIVFIMLSVLMFVAFPRQRQVQSLTDALNSTTRESLTGVRVVRAYNAEDYQDTKFKRENKNLTKLNLLVYRLMSL
MNPVMTVVSSGLTLAIYWIGAYLLNDIKIPMTSVTAAKGAIADRISVFSDMVVFSSYAMQVVVGFMMMVAIFIILPRALV
SAKRINEVLALNSSVHFKEYSKADNARKGEVEFHDVSFRYSKNSRAVIEHVSFSAKAGETVAFIGSTGSGKSTLVNLIPR
FYDATEGWIKIDGIKVQNYSHDDLNNKVGYIPQKAVLFSGTIRSNIAFGQSDQAPLDDAKIWEALELAQAKNFVEEKEKG
LDTEVAQGGTNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRILRNDLAKKTKEMTKLIVAQRISTIMDADHIL
VLDQGKVVGQGTHKELLANNDIYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1121432 EL130_RS06210 WP_002283869.1 1235603..1237405(+) (rcrP) [Streptococcus mutans strain NCTC10832]
ATGTTTAAAATTTTTAAACGTCTAAATGCTAAAGAATGGGGCATGGTTCTCCTTAGTACTGCCTTTATCTGTTTGGCTGT
CTGGATGGATTTGAAGACGCCCGAATATATGTCCAACATTACAACCTTGCTGCAGACTAAGGGAACGACCGCCTCAGATA
TTATGGATCCGGGATCTAAGATGCTCATGTTTTCATTTGGGAGCTTTTTTATGGCCGTTCTAGTTGGTTTTTTAGCTTCA
AGAACAGCTGCTAGCTTTACGACCCGTCTTCGATCTGATATTTTCAATCGGGTTATGGATTATTCAGAGGCGGAAATCAA
GAAATTTTCCATTCCCAGCCTTCTAACGCGTACGACTAATGATTTGACACAGTTGCAAATCATGATCGTTATGGGAATGC
AAGTGGTGACACGCGGTCCAATCATGGCTGTTTGGGCCTTGACTAAAATCTGGGGTAAAAGCGATGAATGGACAGGAGCA
GTCGGTGTTGCCGTTTTAATTGTCTTTATTATGCTGTCTGTTTTGATGTTTGTCGCTTTTCCAAGACAGCGTCAGGTGCA
GAGCTTGACGGATGCTCTAAATTCTACAACCCGTGAATCTCTGACTGGTGTTCGTGTTGTTCGGGCTTACAATGCAGAAG
ATTATCAGGACACTAAATTTAAGCGGGAAAATAAAAACCTGACGAAATTGAATTTATTGGTCTATCGTCTGATGTCGCTA
ATGAATCCTGTCATGACAGTTGTTTCCAGTGGTCTAACTTTAGCTATTTATTGGATTGGAGCTTACCTGCTCAATGATAT
TAAAATTCCTATGACGAGTGTGACAGCTGCTAAAGGAGCTATTGCTGATCGTATCAGTGTTTTTAGTGATATGGTTGTCT
TTTCATCTTATGCCATGCAGGTTGTTGTCGGTTTTATGATGATGGTCGCTATCTTTATCATTTTACCGCGTGCTTTAGTT
TCTGCCAAACGAATTAATGAAGTATTGGCGCTTAACTCATCTGTACACTTCAAAGAATATTCTAAAGCAGACAATGCTCG
AAAAGGAGAAGTCGAATTTCATGATGTATCGTTTCGTTACAGTAAAAATTCTCGTGCGGTTATTGAGCATGTGTCTTTCA
GTGCTAAAGCTGGTGAGACAGTTGCTTTTATTGGTTCCACTGGCTCAGGAAAATCAACTCTTGTTAATCTGATTCCTCGT
TTTTATGATGCTACAGAAGGTTGGATTAAGATAGATGGCATCAAAGTGCAAAATTACAGCCATGATGACCTCAACAATAA
AGTCGGCTATATTCCGCAAAAGGCAGTGCTTTTTAGTGGGACCATTCGTTCTAATATTGCATTTGGGCAAAGCGATCAAG
CGCCGCTTGATGATGCTAAAATTTGGGAGGCTCTTGAACTAGCCCAAGCCAAAAACTTTGTTGAAGAAAAAGAAAAGGGT
CTGGATACCGAGGTAGCTCAAGGCGGTACCAACTTCTCTGGCGGTCAAAAGCAGCGCTTAGCTATTGCCCGTGCACTTGC
ACGCAAACCAGAAATTCTTATTTTTGATGACTCCTTCTCAGCTCTTGATTATAAGACGGATCGCATTCTGCGAAATGATT
TGGCAAAGAAAACCAAAGAAATGACTAAGTTGATTGTCGCCCAACGTATTTCAACTATTATGGATGCTGATCATATTTTG
GTCTTAGATCAAGGAAAGGTTGTTGGCCAAGGAACACACAAGGAATTACTGGCTAATAACGATATTTATCAAGAAATTGC
TTATTCACAACTATCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(369-518)

ABC transporter transmembrane region (ABC_membrane)

(17-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

99.667

100

0.997

Multiple sequence alignment