Detailed information NTG1121223

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: EL139_RS05030
• Genome accession: NZ_LR134316
• Coordinates: 959552..960484 (+)
• Length: 310 a.a.
• NCBI ID: WP_111717596.1
• Uniprot ID: A0A9X8T0F0
• Organism: Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 954552..965484

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL139_RS05010 (NCTC6181_01023)	-	954617..956272 (+)	1656	WP_003058031.1	peptide ABC transporter substrate-binding protein	-
EL139_RS05015 (NCTC6181_01024)	-	956540..957454 (+)	915	WP_111717599.1	ABC transporter permease	-
EL139_RS05020 (NCTC6181_01025)	-	957464..958495 (+)	1032	WP_111717598.1	ABC transporter permease	-
EL139_RS05025 (NCTC6181_01026)	oppD	958507..959559 (+)	1053	WP_111717597.1	ABC transporter ATP-binding protein	Regulator
EL139_RS05030 (NCTC6181_01027)	amiF	959552..960484 (+)	933	WP_111717596.1	ATP-binding cassette domain-containing protein	Regulator
EL139_RS05035 (NCTC6181_01028)	rnjA	960664..962346 (-)	1683	WP_003056700.1	ribonuclease J1	-
EL139_RS05040 (NCTC6181_01029)	-	962348..962578 (-)	231	WP_003056704.1	DNA-dependent RNA polymerase subunit epsilon	-
EL139_RS05045 (NCTC6181_01030)	tsaB	962864..963562 (+)	699	WP_111717595.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
EL139_RS05050 (NCTC6181_01031)	rimI	963564..963989 (+)	426	WP_111717594.1	ribosomal protein S18-alanine N-acetyltransferase	-
EL139_RS05055 (NCTC6181_01032)	tsaD	963979..964995 (+)	1017	WP_111717593.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 35189.00 Da
• Isoelectric Point: 6.6435

>NTDB_id=1121223 EL139_RS05030 WP_111717596.1 959552..960484(+) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181]
MNDNRKKLVELKNVSLTFNKGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINEGEIIFNGETVSHL
KGKDLRTFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREDRVQELLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQHKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNHPIHPYTKSLLSAIPEPDPDKERQRVADVYDPSQELDGQERQMHEITPGHFVLATQEEADQYRREYH

Nucleotide

• Length: 933 bp

>NTDB_id=1121223 EL139_RS05030 WP_111717596.1 959552..960484(+) (amiF) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181]
ATGAATGATAATCGAAAGAAATTAGTAGAGTTAAAAAATGTCTCCTTAACTTTCAATAAGGGAAAGAAAAACGAAGTCAA
AGCCATTGATAATGTGAGCTTTGATATTTATGAAGGGGAAGTGTTTGGACTGGTTGGGGAATCCGGATCAGGAAAAACAA
CTGTTGGTCGCGCCATTTTAAAGCTTTATGATATTAATGAAGGGGAAATTATTTTTAATGGTGAAACCGTTTCTCATTTG
AAAGGGAAAGACTTGCGAACCTTTCGTAAGGATGCTCAGATGATTTTCCAAGATCCTCAGGCTAGTCTTAACGGCCGTAT
GAAAATCAGAGATATTGTGGCAGAAGGGCTAGATATTCATGGACTAACAGCTTCAAAGGCAGAACGAGAAGACCGCGTGC
AAGAACTCCTTGATTTGGTTGGGTTGAATAAGGACCATTTGACACGTTACCCCCATGAATTTTCTGGTGGTCAACGTCAA
CGGATTGGGATTGCCCGTGCTTTGGCAGTGAAACCTAAATTTATCATTGCTGATGAACCTATCTCAGCTCTCGATGTGTC
GATTCAGGCCCAGGTGGTTAACTTGATGCAAAAGCTTCAGCACAAACGTGGATTGACCTATCTTTTTATTGCCCATGACT
TGTCAATGGTCAAATACATTTCTGACCGTATCGGAGTCATGCACTGGGGTAAAATGTTGGAGATTGGGACCTCAGATGAT
GTCTATAATCACCCTATTCATCCTTATACCAAGAGCCTACTCTCGGCTATTCCTGAGCCAGATCCAGACAAAGAACGTCA
GCGGGTGGCTGATGTGTATGATCCAAGTCAAGAATTGGACGGCCAAGAACGTCAGATGCATGAGATTACTCCAGGCCATT
TTGTCTTAGCTACCCAAGAAGAAGCAGACCAATATCGACGGGAGTATCATTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-268)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.098	98.387	0.532
amiF	Streptococcus thermophilus LMG 18311	53.77	98.387	0.529
amiF	Streptococcus salivarius strain HSISS4	53.443	98.387	0.526