Detailed information NTG1120785

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: EL116_RS08325
• Genome accession: NZ_LR134304
• Coordinates: 1692827..1695316 (-)
• Length: 829 a.a.
• NCBI ID: WP_047549096.1
• Uniprot ID: A0A2K4AGM9
• Organism: Staphylococcus schweitzeri strain NCTC13712
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1687827..1700316

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL116_RS08300 (NCTC13712_01608)	-	1687853..1688491 (-)	639	WP_047448163.1	O-methyltransferase	-
EL116_RS08305 (NCTC13712_01609)	-	1688772..1689080 (-)	309	WP_000134779.1	DUF1292 domain-containing protein	-
EL116_RS08310 (NCTC13712_01610)	ruvX	1689095..1689523 (-)	429	WP_047426327.1	Holliday junction resolvase RuvX	-
EL116_RS08315 (NCTC13712_01611)	-	1689527..1689787 (-)	261	WP_000426912.1	IreB family regulatory phosphoprotein	-
EL116_RS08320 (NCTC13712_01612)	alaS	1689850..1692480 (-)	2631	WP_047549099.1	alanine--tRNA ligase	-
EL116_RS08325 (NCTC13712_01614)	recD2	1692827..1695316 (-)	2490	WP_047549096.1	ATP-dependent RecD-like DNA helicase	Machinery gene
EL116_RS08330 (NCTC13712_01615)	-	1695318..1695986 (-)	669	WP_047549093.1	tetratricopeptide repeat protein	-
EL116_RS08335 (NCTC13712_01616)	mnmA	1696189..1697307 (-)	1119	WP_047426320.1	tRNA 2-thiouridine(34) synthase MnmA	-
EL116_RS08340 (NCTC13712_01617)	-	1697308..1698450 (-)	1143	WP_047426318.1	cysteine desulfurase family protein	-
EL116_RS08345 (NCTC13712_01618)	-	1698760..1699761 (+)	1002	WP_047549091.1	LLM class flavin-dependent oxidoreductase	-
EL116_RS08350 (NCTC13712_01619)	-	1700169..1700309 (-)	141	WP_000009234.1	SAS049 family protein	-

Sequence

Protein

• Length: 829 a.a.
• Molecular weight: 93457.01 Da
• Isoelectric Point: 4.4340

>NTDB_id=1120785 EL116_RS08325 WP_047549096.1 1692827..1695316(-) (recD2) [Staphylococcus schweitzeri strain NCTC13712]
MSDPTLFDYSMIKGTVEAILFQNSDNFYTVLKVDTIETNEDFDTMPTVVGFLPNIVEGDVYTFKGQVVEHPRYGKQLKAE
TFEKELPQTKEAIISYLSSELFKGVGKKTAQNIVNTLGENAINDILDDPTVLEKVSGLPKKKQKQIAEQISANQESEKIM
IRLHDLGFGPKLSMAIYQFYLGDTLSILDQNPYQLIYDIKGIGFNKADQLARNIGIAYNDNERLKAALLYTLEEECIKQG
HTYLPVNVVIDLTADVLNYQDTEYIDSEKLDEMLQYLNEEKKLIIDNEQVAIPSLYYSEIKSVQNLFRIKTHTNKLTEIE
QSDLQMHIGDIEDANQVNYAASQREALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYVNDDYPVVLA
APTGRASKRLQESTGLEAMTIHRLIGWNQDTKPEDILDNEINARLIIIDEMSMVDTWLFHQFLSAVPLDAQLIFVGDEDQ
LPSVGPGQVFKDLIESKAIPRVNLTEVYRQQDGSSIIELAHRMKLGQKIDITQRFHDRSFINCQANQIPDVVEKVVTSAV
NKGYTMADIQVLAPMYKGNAGIKRLNQVLQDILNPKEKDTREIEFGDVVFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFW
AKENALNKDVLVVDFEGNEITFTKQDMTELTHAYCTSIHKSQGSEFPIVIMPIVKQYFRMLQRPILYTGLTRAKTSLVLL
GDSEAFDIGLKTNGQERLTQLCTLLKGYFNNDSVESTLSIVENSTSSKQNDSTESEDNQIESLNDNPEEDLSENLSVQKS
NIVLTEATIFKIDPMINMGEITPYDFIER

Nucleotide

• Length: 2490 bp

>NTDB_id=1120785 EL116_RS08325 WP_047549096.1 1692827..1695316(-) (recD2) [Staphylococcus schweitzeri strain NCTC13712]
ATGTCAGACCCTACACTATTTGATTATTCGATGATCAAGGGTACTGTTGAAGCGATATTGTTTCAAAACAGTGATAATTT
TTATACGGTACTCAAAGTAGATACCATAGAAACAAATGAAGATTTTGACACAATGCCGACAGTCGTAGGGTTTCTTCCAA
ATATTGTTGAAGGAGATGTCTACACATTTAAAGGACAAGTTGTTGAACATCCTCGTTATGGTAAACAATTAAAAGCCGAA
ACATTTGAAAAAGAATTACCACAAACTAAAGAAGCTATCATAAGTTATTTATCAAGTGAATTGTTTAAAGGTGTTGGTAA
AAAGACTGCTCAAAATATTGTAAATACACTAGGTGAAAATGCGATTAACGATATATTAGATGATCCAACTGTATTGGAAA
AAGTTTCAGGGTTACCGAAAAAGAAACAAAAGCAAATTGCAGAACAAATTTCAGCAAATCAAGAATCAGAAAAAATTATG
ATTCGTTTGCATGATTTAGGATTCGGTCCTAAACTTTCAATGGCAATTTATCAATTTTATCTTGGAGACACACTATCGAT
TTTAGATCAAAATCCATATCAATTAATTTACGATATTAAAGGGATTGGTTTTAACAAGGCGGATCAACTCGCTAGAAATA
TTGGTATAGCATATAACGATAATGAGCGATTAAAAGCAGCATTGCTTTATACATTAGAGGAAGAATGCATAAAACAAGGA
CATACTTATTTGCCTGTTAATGTTGTAATTGATTTAACTGCTGATGTATTAAATTATCAAGATACTGAGTACATCGATTC
TGAAAAGTTAGATGAAATGTTGCAATACTTGAATGAAGAAAAGAAATTAATCATCGATAATGAGCAGGTGGCCATTCCTA
GCTTGTACTATTCAGAAATCAAAAGCGTTCAAAATTTATTTCGAATAAAGACGCATACAAATAAACTTACTGAAATTGAA
CAATCCGATTTACAAATGCATATTGGTGATATTGAAGATGCAAATCAAGTGAACTATGCAGCTTCACAAAGAGAAGCTTT
ACAAACAGCAATTAATTCTAAAGTAATGTTGTTAACTGGAGGTCCTGGTACTGGGAAAACGACAGTAATTAAAGGCATAG
TAGAATTGTACGCTGAAATTCATGGTTTATCTTTAGATTATGATGATTATGTTAACGACGACTACCCTGTCGTATTAGCA
GCGCCAACAGGTAGAGCATCAAAACGTCTACAAGAATCTACAGGATTAGAGGCAATGACTATTCATCGCTTAATTGGTTG
GAATCAAGATACAAAGCCAGAGGATATACTAGATAATGAGATAAATGCACGATTAATAATTATTGATGAAATGTCAATGG
TGGATACATGGCTGTTTCATCAGTTTTTAAGTGCGGTTCCATTAGATGCACAATTAATATTTGTAGGTGATGAAGATCAA
CTACCTTCAGTAGGTCCTGGACAAGTTTTTAAAGATTTAATTGAATCTAAAGCGATTCCTAGAGTGAATCTAACAGAAGT
TTACCGACAACAAGATGGTTCAAGTATCATTGAATTAGCACATCGAATGAAATTAGGACAGAAAATTGATATTACACAAC
GTTTTCATGATCGTAGTTTTATTAATTGCCAAGCTAATCAAATTCCAGATGTTGTTGAAAAAGTAGTAACTAGTGCAGTT
AATAAAGGATATACGATGGCAGATATCCAAGTGCTTGCACCAATGTATAAAGGAAATGCTGGTATTAAACGATTAAATCA
AGTTTTACAAGATATATTAAATCCTAAAGAAAAAGACACACGTGAAATTGAATTTGGTGATGTTGTATTTAGAAAAGGAG
ATAAAGTTCTACAACTTGTTAATCGACCTAATGACAATATATTTAATGGTGATATAGGTGTTATTGTTGGCATTTTTTGG
GCTAAGGAAAATGCACTTAATAAAGATGTCCTTGTTGTTGATTTTGAAGGTAATGAAATTACATTTACAAAACAAGATAT
GACGGAGTTAACACATGCATATTGTACATCGATTCATAAATCACAAGGTTCAGAATTTCCAATTGTTATTATGCCGATTG
TAAAACAATATTTTAGAATGTTACAAAGACCTATCTTATACACAGGTTTAACTAGGGCTAAAACAAGTTTGGTTTTACTG
GGTGATTCAGAAGCATTTGATATTGGTTTGAAAACAAACGGGCAAGAACGTTTAACGCAGTTGTGCACATTATTAAAAGG
ATATTTTAATAATGACTCAGTTGAAAGTACGCTGTCCATTGTTGAAAACAGTACAAGTTCTAAACAAAATGATTCAACTG
AGAGTGAAGATAATCAGATTGAATCACTGAACGATAACCCTGAAGAAGACTTATCTGAAAATCTATCAGTACAAAAAAGC
AATATTGTTCTAACTGAAGCTACTATATTTAAAATAGATCCTATGATTAATATGGGGGAAATCACACCATATGACTTCAT
AGAACGTTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (339-544)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-720)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

3D structure

• AlphaFold DB: A0A2K4AGM9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	48.727	99.517	0.485