Detailed information NTG1120502

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: EL097_RS04375
• Genome accession: NZ_LR134293
• Coordinates: 845152..846084 (+)
• Length: 310 a.a.
• NCBI ID: WP_003045261.1
• Uniprot ID: A0AAV3FV95
• Organism: Streptococcus canis strain NCTC12191
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 840152..851084

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL097_RS11040	-	841458..841901 (-)	444	Protein_791	transposase	-
EL097_RS04360 (NCTC12191_00859)	-	842139..843053 (+)	915	WP_003045266.1	ABC transporter permease	-
EL097_RS04365 (NCTC12191_00860)	-	843063..844094 (+)	1032	WP_003045264.1	ABC transporter permease	-
EL097_RS04370 (NCTC12191_00861)	oppD	844106..845155 (+)	1050	WP_003045263.1	ABC transporter ATP-binding protein	Regulator
EL097_RS04375 (NCTC12191_00862)	amiF	845152..846084 (+)	933	WP_003045261.1	ABC transporter ATP-binding protein	Regulator
EL097_RS04380 (NCTC12191_00863)	rnjA	846267..847949 (-)	1683	WP_003045259.1	ribonuclease J1	-
EL097_RS04385 (NCTC12191_00864)	-	847951..848181 (-)	231	WP_003045256.1	DNA-dependent RNA polymerase subunit epsilon	-
EL097_RS04390 (NCTC12191_00865)	tsaB	848466..849164 (+)	699	WP_003045253.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
EL097_RS04395 (NCTC12191_00866)	rimI	849166..849591 (+)	426	WP_003045251.1	ribosomal protein S18-alanine N-acetyltransferase	-
EL097_RS04400 (NCTC12191_00867)	tsaD	849581..850597 (+)	1017	WP_003045249.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 35178.04 Da
• Isoelectric Point: 6.7833

>NTDB_id=1120502 EL097_RS04375 WP_003045261.1 845152..846084(+) (amiF) [Streptococcus canis strain NCTC12191]
MNDNRKKLVALKNVSLTFNKGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISEGEIIFNGETVSHL
KGKDLRTFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTTSKAEREERVQELLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQHKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNHPIHPYTQCLLSAIPEPDPDKERQRVADVYDPSQELDGQERQMHEITPGHFVLATQEEADHYRRDYR

Nucleotide

• Length: 933 bp

>NTDB_id=1120502 EL097_RS04375 WP_003045261.1 845152..846084(+) (amiF) [Streptococcus canis strain NCTC12191]
ATGAATGACAATCGAAAAAAATTAGTAGCCTTAAAAAATGTCTCCCTAACTTTCAATAAAGGCAAGAAAAACGAAGTTAA
GGCTATTGATAACGTTAGTTTTGATATTTATGAAGGCGAAGTCTTTGGACTGGTGGGGGAATCAGGGTCAGGGAAAACAA
CAGTTGGCCGTGCGATTCTGAAACTTTATGATATTAGTGAAGGAGAAATCATTTTTAATGGTGAAACTGTTTCTCACCTG
AAAGGGAAAGACTTGCGGACCTTCCGTAAGGATGCCCAAATGATTTTCCAAGACCCTCAGGCCAGTCTCAATGGTCGTAT
GAAAATTAGAGATATTGTGGCAGAAGGGCTAGATATTCATGGCCTGACAACTTCAAAAGCAGAGCGAGAAGAGCGGGTGC
AAGAACTCCTTGACTTGGTTGGATTGAATAAGGACCATTTAACCCGTTACCCGCATGAATTTTCAGGAGGGCAACGTCAG
CGGATTGGGATTGCCCGCGCTTTGGCGGTTAAACCTAAATTTATCATTGCTGATGAACCTATCTCAGCTCTCGATGTGTC
CATTCAGGCACAGGTGGTTAATTTGATGCAAAAACTTCAGCACAAACGTGGCTTGACCTATCTCTTTATTGCTCATGACT
TGTCCATGGTTAAATACATTTCTGACCGTATTGGCGTCATGCATTGGGGCAAAATGTTGGAGATTGGGACATCAGATGAT
GTTTACAATCATCCCATTCACCCCTACACCCAGTGTCTGCTTTCGGCTATTCCTGAGCCAGATCCTGACAAAGAACGGCA
ACGTGTGGCTGATGTTTACGACCCTAGTCAAGAATTGGACGGTCAGGAGCGCCAAATGCACGAAATTACCCCAGGGCATT
TTGTTTTAGCTACCCAAGAAGAAGCTGACCATTATCGACGTGACTATCGTTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-268)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	53.115	98.387	0.523
amiF	Streptococcus thermophilus LMG 18311	52.787	98.387	0.519
amiF	Streptococcus salivarius strain HSISS4	52.459	98.387	0.516