Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   EL084_RS02595 Genome accession   NZ_LR134292
Coordinates   519881..520744 (+) Length   287 a.a.
NCBI ID   WP_004231093.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC10389     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 514881..525744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL084_RS02565 (NCTC10389_00552) - 515114..515989 (+) 876 WP_004231084.1 F0F1 ATP synthase subunit gamma -
  EL084_RS02570 (NCTC10389_00553) atpD 516054..517460 (+) 1407 WP_126440067.1 F0F1 ATP synthase subunit beta -
  EL084_RS02575 (NCTC10389_00554) - 517473..517889 (+) 417 WP_004231089.1 F0F1 ATP synthase subunit epsilon -
  EL084_RS02580 (NCTC10389_00555) - 518018..518254 (+) 237 WP_126440068.1 DUF1146 family protein -
  EL084_RS02585 (NCTC10389_00556) murA 518316..519590 (+) 1275 WP_126440069.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EL084_RS02590 (NCTC10389_00557) - 519593..519781 (+) 189 WP_004231092.1 DNA-directed RNA polymerase subunit beta -
  EL084_RS02595 (NCTC10389_00558) endA 519881..520744 (+) 864 WP_004231093.1 DNA/RNA non-specific endonuclease Machinery gene
  EL084_RS02600 (NCTC10389_00559) pheS 521033..522076 (+) 1044 WP_004231094.1 phenylalanine--tRNA ligase subunit alpha -
  EL084_RS02605 (NCTC10389_00560) - 522108..522632 (+) 525 WP_115255022.1 GNAT family N-acetyltransferase -
  EL084_RS02610 (NCTC10389_00561) pheT 522702..525107 (+) 2406 WP_126440070.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 30594.77 Da        Isoelectric Point: 8.2963

>NTDB_id=1120436 EL084_RS02595 WP_004231093.1 519881..520744(+) (endA) [Streptococcus equinus strain NCTC10389]
MAKKSNLSKKTKSIISLLILLVGIGTGWVTTSDSSDLVSQVLSLVTGESSSVASNHSSANESAPNQELAESVLTDNVKAQ
LGSTIEWNGAGAYLVNGNKTSLNAKVASKPYANNKTKVVQGQSVPTVANALLSKSTRQYRSREETGNGSTSWTPAGWHQV
QNLSGTYSHAVDRGHLLGYALVGGLKGFDASTSNPENVATQTAWANEARSEDSTGQNYYEGLVRRALDQNKRVRYRVTLI
YDGDNILASGTHLEAKSSDGSLEFNVFVPNVQSGLTIDYYSGQVSVN

Nucleotide


Download         Length: 864 bp        

>NTDB_id=1120436 EL084_RS02595 WP_004231093.1 519881..520744(+) (endA) [Streptococcus equinus strain NCTC10389]
ATGGCAAAAAAATCAAATCTGTCTAAAAAGACAAAATCAATTATCTCTTTACTGATTTTATTAGTTGGTATTGGTACAGG
GTGGGTAACGACATCTGATTCTAGTGACCTAGTCAGTCAAGTTTTATCCCTTGTTACGGGAGAATCATCATCGGTTGCTT
CAAATCATTCAAGTGCTAATGAATCAGCACCAAATCAGGAATTGGCTGAGTCAGTTTTAACTGATAATGTTAAAGCACAG
TTAGGCTCAACTATTGAATGGAATGGAGCAGGGGCTTATCTTGTAAATGGAAATAAAACTTCTTTGAATGCAAAGGTTGC
AAGCAAACCTTATGCCAATAATAAGACGAAAGTTGTACAAGGACAGTCAGTTCCGACAGTTGCTAATGCTCTTTTGAGTA
AGTCAACCCGTCAATACCGAAGCCGTGAGGAAACAGGTAATGGCTCAACCTCTTGGACGCCAGCTGGTTGGCATCAAGTA
CAAAATCTATCTGGAACTTATAGCCATGCGGTTGATCGTGGGCATTTGCTTGGATACGCTTTAGTTGGTGGGCTAAAAGG
TTTTGATGCCTCAACAAGTAACCCTGAAAATGTTGCTACTCAGACAGCTTGGGCAAATGAGGCTAGATCAGAAGATTCAA
CAGGACAGAATTATTATGAAGGGCTTGTCCGTCGAGCACTTGATCAGAATAAACGCGTTCGTTATCGTGTGACTTTGATT
TATGATGGGGACAATATTTTAGCTAGTGGAACACATTTAGAAGCAAAGTCATCTGACGGTAGCTTAGAGTTTAATGTCTT
TGTTCCAAACGTTCAAAGTGGACTTACGATTGACTATTATTCTGGTCAGGTTAGTGTGAATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(95-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

71.556

78.397

0.561
  endA Streptococcus pneumoniae D39

71.556

78.397

0.561
  endA Streptococcus pneumoniae R6

71.556

78.397

0.561
  endA Streptococcus pneumoniae TIGR4

71.556

78.397

0.561

Multiple sequence alignment