Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | EL165_RS11870 | Genome accession | NZ_LR134289 |
| Coordinates | 2586027..2586680 (+) | Length | 217 a.a. |
| NCBI ID | WP_002976801.1 | Uniprot ID | A0A448B357 |
| Organism | Chryseobacterium gleum strain NCTC11432 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2581027..2591680
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL165_RS11855 (NCTC11432_02452) | aceA | 2581139..2582422 (-) | 1284 | WP_202753419.1 | isocitrate lyase | - |
| EL165_RS11860 (NCTC11432_02453) | aceB | 2582534..2584108 (-) | 1575 | WP_002976804.1 | malate synthase A | - |
| EL165_RS11865 (NCTC11432_02454) | - | 2584235..2585713 (+) | 1479 | WP_002976803.1 | helix-turn-helix transcriptional regulator | - |
| EL165_RS11870 (NCTC11432_02455) | comF | 2586027..2586680 (+) | 654 | WP_002976801.1 | double zinc ribbon domain-containing protein | Machinery gene |
| EL165_RS11875 (NCTC11432_02456) | - | 2586813..2587499 (+) | 687 | WP_002976799.1 | alpha/beta hydrolase | - |
| EL165_RS11880 (NCTC11432_02457) | upp | 2587502..2588152 (-) | 651 | WP_041461610.1 | uracil phosphoribosyltransferase | - |
| EL165_RS11885 (NCTC11432_02458) | - | 2588285..2591083 (+) | 2799 | WP_198418458.1 | non-ribosomal peptide synthetase | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25404.18 Da Isoelectric Point: 7.2585
>NTDB_id=1120294 EL165_RS11870 WP_002976801.1 2586027..2586680(+) (comF) [Chryseobacterium gleum strain NCTC11432]
MILDLLFPNRCLHCNRIIVSEILVCDLCFSQIHFTHYNYFENNPIKEKCSLFFPVENAFGLIRFEEEGLSRKIIHELKYR
SREKTGKILANWTTERLDFQDDNPDLLVSVPLHPKKLKERGYNQLHLYTETLSKFYHIPFDHELIRRNHYSKAQALKDKK
HRLETDNTFSITRPVTGKHILLIDDVFTTGNTVSSVAWEILNAGDNKVSVLVMAEDV
MILDLLFPNRCLHCNRIIVSEILVCDLCFSQIHFTHYNYFENNPIKEKCSLFFPVENAFGLIRFEEEGLSRKIIHELKYR
SREKTGKILANWTTERLDFQDDNPDLLVSVPLHPKKLKERGYNQLHLYTETLSKFYHIPFDHELIRRNHYSKAQALKDKK
HRLETDNTFSITRPVTGKHILLIDDVFTTGNTVSSVAWEILNAGDNKVSVLVMAEDV
Nucleotide
Download Length: 654 bp
>NTDB_id=1120294 EL165_RS11870 WP_002976801.1 2586027..2586680(+) (comF) [Chryseobacterium gleum strain NCTC11432]
ATGATATTAGATTTATTATTTCCTAACCGTTGCCTTCACTGCAACAGGATCATTGTTTCCGAGATTCTGGTTTGTGATCT
TTGTTTCAGCCAGATTCATTTTACCCATTACAATTATTTTGAAAATAATCCGATTAAGGAAAAATGCAGTTTATTTTTTC
CTGTTGAGAATGCATTTGGACTGATACGGTTCGAGGAAGAAGGCTTAAGTCGCAAGATTATTCATGAACTAAAATACAGA
AGCCGTGAAAAAACAGGGAAAATTCTGGCAAACTGGACAACAGAGCGCCTGGATTTCCAAGACGACAATCCTGATCTTTT
AGTAAGTGTACCGCTTCATCCAAAAAAACTGAAGGAACGTGGTTACAATCAGCTTCATTTATATACTGAAACTTTGTCTA
AATTTTATCACATTCCTTTTGATCATGAATTAATCAGGAGAAATCATTACTCCAAAGCACAGGCTCTGAAAGACAAGAAG
CACAGATTGGAAACAGACAATACTTTCTCCATCACCCGGCCTGTTACCGGAAAGCATATCCTTCTGATTGATGATGTTTT
CACCACAGGCAATACAGTTTCATCGGTTGCATGGGAGATTCTAAATGCCGGAGACAATAAGGTAAGTGTTTTGGTGATGG
CAGAGGATGTTTAA
ATGATATTAGATTTATTATTTCCTAACCGTTGCCTTCACTGCAACAGGATCATTGTTTCCGAGATTCTGGTTTGTGATCT
TTGTTTCAGCCAGATTCATTTTACCCATTACAATTATTTTGAAAATAATCCGATTAAGGAAAAATGCAGTTTATTTTTTC
CTGTTGAGAATGCATTTGGACTGATACGGTTCGAGGAAGAAGGCTTAAGTCGCAAGATTATTCATGAACTAAAATACAGA
AGCCGTGAAAAAACAGGGAAAATTCTGGCAAACTGGACAACAGAGCGCCTGGATTTCCAAGACGACAATCCTGATCTTTT
AGTAAGTGTACCGCTTCATCCAAAAAAACTGAAGGAACGTGGTTACAATCAGCTTCATTTATATACTGAAACTTTGTCTA
AATTTTATCACATTCCTTTTGATCATGAATTAATCAGGAGAAATCATTACTCCAAAGCACAGGCTCTGAAAGACAAGAAG
CACAGATTGGAAACAGACAATACTTTCTCCATCACCCGGCCTGTTACCGGAAAGCATATCCTTCTGATTGATGATGTTTT
CACCACAGGCAATACAGTTTCATCGGTTGCATGGGAGATTCTAAATGCCGGAGACAATAAGGTAAGTGTTTTGGTGATGG
CAGAGGATGTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
51.852 |
99.539 |
0.516 |