Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   IX87_RS13870 Genome accession   NZ_CP009257
Coordinates   2753075..2754340 (-) Length   421 a.a.
NCBI ID   WP_001285409.1    Uniprot ID   A0ABX6CPG9
Organism   Acinetobacter baumannii strain AB30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2748075..2759340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX87_RS13840 (IX87_14140) pncA 2748297..2748941 (-) 645 WP_024437648.1 bifunctional nicotinamidase/pyrazinamidase -
  IX87_RS13845 (IX87_14145) dapA 2749271..2750164 (+) 894 WP_000193598.1 4-hydroxy-tetrahydrodipicolinate synthase -
  IX87_RS13850 (IX87_14150) - 2750180..2750782 (+) 603 WP_001177091.1 hypothetical protein -
  IX87_RS13855 (IX87_14155) purC 2750820..2751539 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  IX87_RS13860 (IX87_14160) - 2751732..2751935 (+) 204 WP_000418560.1 hypothetical protein -
  IX87_RS13865 (IX87_14165) - 2752221..2753060 (+) 840 WP_000349492.1 formate/nitrite transporter family protein -
  IX87_RS13870 (IX87_14170) rarA 2753075..2754340 (-) 1266 WP_001285409.1 replication-associated recombination protein A Machinery gene
  IX87_RS13875 (IX87_14175) - 2754446..2755618 (-) 1173 WP_024437647.1 PQQ-dependent sugar dehydrogenase -
  IX87_RS13880 (IX87_14180) - 2755728..2756186 (-) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  IX87_RS13885 (IX87_14185) - 2756381..2756539 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  IX87_RS13890 (IX87_14190) - 2756711..2757448 (+) 738 WP_000100767.1 dienelactone hydrolase family protein -
  IX87_RS13895 (IX87_14195) - 2757634..2757996 (+) 363 WP_000130110.1 HIT family protein -
  IX87_RS13900 (IX87_14200) mutY 2758137..2759171 (+) 1035 WP_001113867.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46932.60 Da        Isoelectric Point: 5.8354

>NTDB_id=112013 IX87_RS13870 WP_001285409.1 2753075..2754340(-) (rarA) [Acinetobacter baumannii strain AB30]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTITNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=112013 IX87_RS13870 WP_001285409.1 2753075..2754340(-) (rarA) [Acinetobacter baumannii strain AB30]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCACCCTTACGTCAAATGATTGATCAGGGACATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTGAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACCCCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGTGCGACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAGGCAATTCAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGCTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCTCGTAAGGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CCATTACCAATGCGGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
TGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGTCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCGATTAATAAGGCCTTGGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAGCTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTACTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCAAGAAACAAGCGTGAAGTTGAAGGTGAACGCTTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

40.75

95.012

0.387