Detailed information NTG1119960

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: EL078_RS01775
• Genome accession: NZ_LR134282
• Coordinates: 328222..329154 (+)
• Length: 310 a.a.
• NCBI ID: WP_003067560.1
• Uniprot ID: A0A1G9P2J7
• Organism: Streptococcus equinus strain NCTC8140
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 323222..334154

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL078_RS01755 (NCTC8140_00349)	-	323443..325095 (+)	1653	WP_126437599.1	peptide ABC transporter substrate-binding protein	-
EL078_RS01760 (NCTC8140_00350)	-	325207..326121 (+)	915	WP_021141673.1	ABC transporter permease	-
EL078_RS01765 (NCTC8140_00351)	-	326133..327164 (+)	1032	WP_126437600.1	ABC transporter permease	-
EL078_RS01770 (NCTC8140_00352)	oppD	327176..328222 (+)	1047	WP_024344767.1	ABC transporter ATP-binding protein	Regulator
EL078_RS01775 (NCTC8140_00353)	amiF	328222..329154 (+)	933	WP_003067560.1	ABC transporter ATP-binding protein	Regulator

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 35035.81 Da
• Isoelectric Point: 5.6591

>NTDB_id=1119960 EL078_RS01775 WP_003067560.1 328222..329154(+) (amiF) [Streptococcus equinus strain NCTC8140]
MTENRKKLVELKNVSLTFNEGKKNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINGGEIDFDGETVSNL
KGKELHEFRKNVQMIFQDPQASLNGRMKIRDIVAEGLDIHKLVNSKEERDEKVQELLSLVGLNKDHMTRYPHEFSGGQRQ
RIGIARALAVQPKFIIADEPISALDVSIQAQVVNLMQKLQRERGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNNPIHPYTKSLLSAIPEPDPESERGRVHQVYDPTAELDGQEREMREITPGHFVLSTEAEAEEYKKALQ

Nucleotide

• Length: 933 bp

>NTDB_id=1119960 EL078_RS01775 WP_003067560.1 328222..329154(+) (amiF) [Streptococcus equinus strain NCTC8140]
ATGACTGAAAATAGAAAAAAGCTTGTTGAACTTAAAAATGTATCTTTGACCTTCAACGAAGGTAAAAAGAACGAAGTAAA
AGCAATCAACAACGTTAGCTTTGACATCTACGAAGGTGAGGTATTTGGTCTAGTTGGTGAATCAGGTTCTGGTAAAACAA
CTGTTGGACGTGCTATCTTGAAACTTTATGATATCAATGGTGGAGAAATTGATTTTGATGGTGAAACAGTTTCTAACCTT
AAAGGTAAAGAATTGCACGAATTCCGTAAAAATGTCCAAATGATTTTCCAAGACCCTCAAGCAAGTCTTAATGGTCGTAT
GAAAATTCGTGACATTGTTGCAGAAGGTCTTGATATTCATAAATTAGTTAATAGTAAAGAAGAACGTGATGAAAAAGTTC
AAGAATTACTATCATTAGTTGGTTTGAACAAAGATCACATGACTCGTTATCCACATGAATTTTCAGGTGGTCAACGTCAA
CGTATTGGTATTGCTCGAGCACTTGCAGTTCAACCAAAATTTATCATTGCTGATGAACCAATTTCAGCCCTTGACGTATC
AATCCAAGCTCAAGTTGTAAACTTGATGCAAAAACTTCAACGTGAACGCGGCTTAACATACTTATTCATCGCTCACGATT
TGTCTATGGTGAAATACATTTCAGACCGTATCGGTGTTATGCACTGGGGAAAAATGCTTGAAATTGGAACATCTGATGAT
GTTTACAATAATCCAATCCACCCATACACTAAGAGTCTGTTGTCTGCTATTCCTGAACCAGACCCAGAATCTGAACGTGG
ACGTGTACACCAAGTGTATGATCCTACTGCAGAGCTTGATGGCCAAGAACGTGAAATGCGAGAAATTACTCCAGGACACT
TTGTACTTTCAACAGAAGCAGAAGCAGAAGAATACAAAAAAGCATTACAATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-265)

• ABC transporter (ABC_tran) (30-181)

3D structure

• AlphaFold DB: A0A1G9P2J7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	56.25	98.065	0.552
amiF	Streptococcus thermophilus LMG 18311	55.921	98.065	0.548
amiF	Streptococcus salivarius strain HSISS4	55.592	98.065	0.545