Detailed information NTG1119743

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: EL077_RS01560
• Genome accession: NZ_LR134273
• Coordinates: 300180..301115 (+)
• Length: 311 a.a.
• NCBI ID: WP_111692166.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. equi strain NCTC12091
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 295180..306115

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL077_RS01540 (NCTC12091_00310)	-	295341..296999 (+)	1659	WP_043030442.1	peptide ABC transporter substrate-binding protein	-
EL077_RS01545 (NCTC12091_00311)	-	297166..298080 (+)	915	WP_012514937.1	ABC transporter permease	-
EL077_RS01550 (NCTC12091_00312)	-	298090..299121 (+)	1032	WP_012678545.1	ABC transporter permease	-
EL077_RS01555 (NCTC12091_00313)	oppD	299134..300180 (+)	1047	WP_012678544.1	ABC transporter ATP-binding protein	Regulator
EL077_RS01560 (NCTC12091_00314)	amiF	300180..301115 (+)	936	WP_111692166.1	ABC transporter ATP-binding protein	Regulator
EL077_RS01565 (NCTC12091_00315)	rnjA	301746..303428 (-)	1683	WP_043025155.1	ribonuclease J1	-
EL077_RS01570 (NCTC12091_00316)	-	303430..303660 (-)	231	WP_012678542.1	DNA-dependent RNA polymerase subunit epsilon	-
EL077_RS01575 (NCTC12091_00317)	tsaB	303946..304644 (+)	699	WP_126436305.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
EL077_RS01580 (NCTC12091_00318)	rimI	304647..305072 (+)	426	WP_012679001.1	ribosomal protein S18-alanine N-acetyltransferase	-
EL077_RS01585 (NCTC12091_00319)	tsaD	305062..306078 (+)	1017	WP_126436307.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-

Sequence

Protein

• Length: 311 a.a.
• Molecular weight: 35063.19 Da
• Isoelectric Point: 9.0170

>NTDB_id=1119743 EL077_RS01560 WP_111692166.1 300180..301115(+) (amiF) [Streptococcus equi subsp. equi strain NCTC12091]
MTEARKKLIEVKNVSLTFNKGKKNEVKAIDRLSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISDGEIIFNGENVSQL
KGKKLHSFRKHAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREARVQELLKLVGLNQDHLTRYPHEFSGGQRQ
RIGIARALAVKPTFIIADEPISALDVSIQAQVVSLMQQLQKKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDE
VYNHPIHPYTKSLISAIPEPDPEKERRRIAEVYDPSQELDGQERQMHEITPGHFVLATQAEAHQYRAERGL

Nucleotide

• Length: 936 bp

>NTDB_id=1119743 EL077_RS01560 WP_111692166.1 300180..301115(+) (amiF) [Streptococcus equi subsp. equi strain NCTC12091]
ATGACAGAAGCTCGTAAAAAATTAATCGAAGTAAAGAATGTTTCCTTAACCTTTAACAAGGGGAAGAAAAACGAGGTTAA
GGCTATTGATCGCCTTAGCTTTGACATTTATGAAGGGGAAGTATTTGGCCTTGTTGGGGAATCAGGCTCAGGCAAGACAA
CAGTTGGTCGAGCTATTTTGAAATTGTATGATATTAGTGATGGCGAGATTATCTTTAATGGAGAAAACGTCTCCCAATTA
AAGGGGAAAAAGCTGCATAGCTTTCGTAAGCATGCGCAAATGATCTTCCAAGATCCTCAGGCTAGTCTGAACGGTCGCAT
GAAAATCAGAGACATTGTTGCAGAGGGATTAGACATTCATGGCTTGACAGCCTCAAAGGCAGAGCGTGAGGCAAGAGTCC
AAGAGCTGTTAAAGCTTGTTGGGCTCAATCAGGATCATTTGACGCGGTACCCACATGAATTTTCCGGTGGCCAACGCCAG
CGGATTGGCATTGCGCGTGCCCTGGCTGTGAAGCCGACCTTTATTATCGCAGATGAGCCGATTTCAGCGCTTGATGTGTC
GATTCAAGCACAGGTCGTGAGTCTCATGCAGCAATTGCAAAAGAAGCGCGGCTTGACCTATCTCTTTATCGCACACGATT
TGTCTATGGTCAAATACATTTCAGACCGTATTGGTGTGATGCATTGGGGCAAAATGCTTGAGATTGGAACATCTGATGAG
GTTTACAATCACCCGATTCACCCTTATACAAAAAGCTTGATCTCGGCCATTCCTGAGCCGGATCCTGAAAAGGAGCGTAG
GCGCATTGCAGAGGTTTATGATCCTAGTCAAGAGCTAGATGGCCAAGAGCGGCAAATGCATGAAATCACTCCTGGGCATT
TTGTCTTAGCGACGCAGGCCGAAGCCCATCAGTACCGAGCAGAGCGTGGCCTCTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-269)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	53.922	98.392	0.531
amiF	Streptococcus thermophilus LMG 18311	53.595	98.392	0.527
amiF	Streptococcus salivarius strain HSISS4	53.268	98.392	0.524