Detailed information NTG1119612

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: EL085_RS05775
• Genome accession: NZ_LR134267
• Coordinates: 1242502..1244901 (+)
• Length: 799 a.a.
• NCBI ID: WP_115807289.1
• Uniprot ID: A0A7Z9CV35
• Organism: Staphylococcus pseudintermedius strain NCTC5661
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1237502..1249901

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL085_RS05750 (SAMEA3504576_01186)	-	1237677..1237862 (+)	186	WP_014613736.1	CsbD family protein	-
EL085_RS05755 (SAMEA3504576_01187)	-	1238327..1239343 (-)	1017	WP_014613737.1	LLM class flavin-dependent oxidoreductase	-
EL085_RS05760 (SAMEA3504576_01188)	-	1239552..1240697 (+)	1146	WP_014613738.1	cysteine desulfurase family protein	-
EL085_RS05765 (SAMEA3504576_01189)	mnmA	1240697..1241809 (+)	1113	WP_014613739.1	tRNA 2-thiouridine(34) synthase MnmA	-
EL085_RS05770 (SAMEA3504576_01190)	-	1241825..1242499 (+)	675	WP_020219749.1	tetratricopeptide repeat protein	-
EL085_RS05775 (SAMEA3504576_01191)	recD2	1242502..1244901 (+)	2400	WP_115807289.1	ATP-dependent RecD-like DNA helicase	Machinery gene
EL085_RS05780 (SAMEA3504576_01193)	alaS	1245147..1247777 (+)	2631	WP_065520479.1	alanine--tRNA ligase	-
EL085_RS05785 (SAMEA3504576_01194)	-	1247840..1248112 (+)	273	WP_014613743.1	IreB family regulatory phosphoprotein	-
EL085_RS05790 (SAMEA3504576_01195)	ruvX	1248105..1248533 (+)	429	WP_014613744.1	Holliday junction resolvase RuvX	-
EL085_RS05795 (SAMEA3504576_01196)	-	1248547..1248867 (+)	321	WP_014613745.1	DUF1292 domain-containing protein	-

Sequence

Protein

• Length: 799 a.a.
• Molecular weight: 90344.67 Da
• Isoelectric Point: 4.5526

>NTDB_id=1119612 EL085_RS05775 WP_115807289.1 1242502..1244901(+) (recD2) [Staphylococcus pseudintermedius strain NCTC5661]
MENPTLFDHTFIKGTVEMILFQNTDNHYTVLKVEIEETNGDFDDMATVVGYFPNMVEDESYTFKGQIVQHARYGQQLKAE
TFQKEIPHTKDAVIAYLSSELFKGIGKKTAESIVNTLGENAIHDILKDESVIEQVPKLSKAKQQQIVEQIYANQESEQVM
IRLNELGFGSKLAMDIYKFYKSDTLTVLDQNPYQLVYDIKGVGFNKADQLAQQLGIHPEHPDRLKAGLLYLVEDTCIKQG
HTYLPQEALINETIQLLSQGKDSSVDYDTMTQILAELVEEKRLVNQEEMVAIPSLYYSEIKSTQNLYKIFANREHLTTFD
ASDIQLHIGEIEEVNEVHYAPSQKEALEYAIQHKVMLLTGGPGTGKTTVIKGIVQLYAEIHGISLDYDDYSDEDDYPVVL
AAPTGRASKRLHEATGLEAMTIHRLIGWNQDTKPQDKLDNEIHAKLIIIDEMSMVDTWLFHQFMDAVPIDAQVVLVGDED
QLPSVGPGQVFKDLIDANVLPRINLTEVYRQQDGSSIIDLAHRMKLGEKVDITQRFHDRSFIPCQTDQIPQVVEKVVNNA
VQKGYTMADIQVLAPMYRGNAGIKKLNQILQGILNPLSDESQREIEFGDVLFRKGDKVLQLINRPNDNVFNGDIGVIVGI
FWAKENALNKDVLVVDYDGNEITYLRSDLTELTHAYCTSIHKAQGSEFPIVIMPIVKQYFRMLQKPILYTGLTRAKQSLV
FLGDADAFNIGLATAGQTRLTQLQTFLMQYFTPEDTDDKTDTDTASAEFILTEATMFKIHPMINMGEVTPYDFLEIDKV

Nucleotide

• Length: 2400 bp

>NTDB_id=1119612 EL085_RS05775 WP_115807289.1 1242502..1244901(+) (recD2) [Staphylococcus pseudintermedius strain NCTC5661]
ATGGAAAATCCAACACTGTTTGACCATACATTTATTAAAGGCACCGTAGAGATGATTTTGTTTCAGAATACGGACAATCA
TTACACAGTGCTTAAAGTTGAAATAGAAGAAACAAATGGTGACTTTGATGATATGGCAACAGTGGTTGGATATTTTCCGA
ATATGGTAGAAGATGAGTCGTACACTTTTAAAGGCCAAATCGTGCAACATGCAAGATATGGTCAGCAATTAAAAGCTGAG
ACGTTTCAAAAAGAAATTCCTCATACCAAAGATGCTGTTATTGCATATTTATCTAGTGAATTGTTTAAAGGGATTGGTAA
AAAAACAGCAGAATCCATTGTCAATACATTAGGTGAAAATGCGATTCATGACATTTTGAAAGATGAATCTGTCATCGAAC
AAGTGCCTAAACTGTCTAAAGCGAAACAACAACAAATTGTCGAGCAGATTTATGCCAACCAAGAAAGTGAACAAGTGATG
ATTCGATTGAACGAACTTGGTTTTGGTTCAAAGCTTGCGATGGACATTTACAAGTTTTATAAAAGTGATACATTAACGGT
ACTCGACCAAAATCCGTATCAACTTGTTTATGACATTAAAGGGGTTGGTTTTAACAAAGCGGACCAACTGGCACAACAGC
TCGGTATTCATCCAGAGCACCCCGACCGTTTAAAAGCCGGCTTACTTTATTTAGTTGAAGATACGTGTATTAAACAAGGT
CATACGTACCTCCCACAAGAAGCGTTAATCAATGAAACGATTCAACTGCTGTCTCAGGGCAAAGATTCAAGTGTCGACTA
TGACACCATGACGCAAATTTTAGCTGAATTAGTTGAAGAAAAACGACTAGTGAATCAAGAGGAAATGGTGGCCATCCCAA
GTCTTTATTATTCGGAAATTAAAAGCACACAAAATTTATATAAAATATTTGCCAATCGAGAGCATTTAACTACATTTGAT
GCTTCAGATATTCAATTACATATTGGGGAAATTGAAGAGGTCAATGAAGTACATTATGCCCCTTCTCAAAAAGAGGCTTT
AGAATATGCGATTCAACATAAAGTCATGCTTCTCACGGGTGGACCAGGTACAGGGAAAACAACTGTCATTAAAGGAATTG
TCCAGTTATATGCAGAAATTCACGGCATCTCATTAGATTACGATGACTATTCAGATGAAGATGATTATCCGGTCGTATTA
GCTGCACCAACCGGAAGAGCGTCTAAACGTTTACATGAAGCGACAGGGTTAGAAGCAATGACGATTCACCGCTTAATTGG
TTGGAATCAAGATACGAAGCCGCAAGACAAATTAGACAATGAAATTCATGCGAAATTGATTATTATTGATGAAATGTCTA
TGGTCGACACTTGGCTATTCCATCAATTTATGGATGCAGTCCCTATAGATGCCCAAGTCGTATTAGTCGGTGATGAAGAC
CAGCTTCCATCAGTTGGCCCTGGACAAGTTTTTAAAGATCTCATTGATGCAAATGTATTACCGCGCATCAATTTAACTGA
AGTTTATCGCCAACAGGACGGCTCCAGTATTATTGATTTAGCGCATCGTATGAAACTCGGTGAAAAAGTTGATATTACCC
AACGTTTTCACGATCGTTCGTTTATTCCATGTCAAACCGATCAAATTCCACAAGTCGTAGAAAAAGTCGTCAACAATGCC
GTGCAAAAAGGGTATACAATGGCAGATATTCAAGTGCTCGCGCCGATGTATCGTGGTAATGCAGGGATTAAAAAGCTCAA
TCAAATTTTACAAGGCATTTTGAACCCTTTGTCAGACGAATCGCAACGTGAGATTGAATTTGGTGATGTTCTATTTCGTA
AAGGCGACAAAGTATTGCAACTGATTAATCGTCCAAACGATAATGTGTTTAATGGTGATATTGGTGTTATTGTCGGTATT
TTTTGGGCAAAGGAAAATGCTTTAAATAAAGATGTCTTGGTCGTTGATTATGATGGGAACGAAATTACTTATTTACGCTC
TGATTTGACGGAATTGACACATGCATATTGTACTTCGATTCATAAAGCGCAAGGTTCAGAGTTTCCAATTGTCATCATGC
CGATTGTTAAGCAGTATTTTAGAATGTTACAAAAACCGATTTTATATACTGGATTAACGCGTGCCAAACAATCGCTCGTT
TTTCTTGGTGATGCAGATGCTTTTAATATCGGGTTAGCGACTGCGGGTCAAACGCGATTAACACAATTACAAACGTTCTT
AATGCAATATTTTACTCCGGAAGATACTGATGATAAAACAGATACTGATACAGCTTCGGCTGAGTTTATTTTAACTGAAG
CGACTATGTTTAAAATCCATCCGATGATTAATATGGGTGAAGTGACACCTTATGACTTTTTAGAAATTGACAAAGTTTAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (674-721)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (586-657)

• AAA domain (AAA_30) (339-546)

3D structure

• AlphaFold DB: A0A7Z9CV35

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	49.435	99.75	0.493