Detailed information NTG1118987

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: EL020_RS08995
• Genome accession: NZ_LR134203
• Coordinates: 1769670..1770602 (-)
• Length: 310 a.a.
• NCBI ID: WP_061409237.1
• Uniprot ID: -
• Organism: Streptococcus lutetiensis strain NCTC11436
• Function: internalize XIP (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1768551..1769504	1769670..1770602	flank	166

Gene organization within MGE regions

Location: 1768551..1770602

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL020_RS08990 (NCTC11436_01917)	-	1768551..1769504 (+)	954	WP_126402656.1	IS30 family transposase	-
EL020_RS08995 (NCTC11436_01918)	amiF	1769670..1770602 (-)	933	WP_061409237.1	ABC transporter ATP-binding protein	Regulator

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 34995.83 Da
• Isoelectric Point: 6.0651

>NTDB_id=1118987 EL020_RS08995 WP_061409237.1 1769670..1770602(-) (amiF) [Streptococcus lutetiensis strain NCTC11436]
MTENRKKLVELKNVSLTFNEGKKNEVKAINNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISGGEIDFNGETVSNL
KGKKLHEFRKNVQMIFQDPQASLNARMKIRDIVAEGLDIHKLVNSKEERDEKVQELLSLVGLNKDHMTRYPHEFSGGQRQ
RIGIARALAVQPKFIIADEPISALDVSIQAQVVNLMQKLQREKGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSED
VYNNPIHPYTKSLLSAIPEPDPESERERVHQAYDPSAELDGQEREMREITPGHFVLSTEAEAEEYKKALS

Nucleotide

• Length: 933 bp

>NTDB_id=1118987 EL020_RS08995 WP_061409237.1 1769670..1770602(-) (amiF) [Streptococcus lutetiensis strain NCTC11436]
ATGACTGAAAATAGAAAAAAGCTTGTTGAACTTAAAAATGTCTCTTTGACTTTCAACGAAGGCAAAAAGAATGAAGTAAA
AGCTATCAACAACGTCAGCTTCGATATCTATGAAGGTGAAGTCTTTGGTCTAGTTGGTGAATCAGGTTCTGGTAAAACAA
CTGTTGGACGTGCTATTTTAAAACTTTACGATATTAGTGGTGGTGAAATCGACTTTAACGGAGAAACGGTTTCTAACCTT
AAAGGTAAAAAACTACATGAATTCCGTAAAAATGTCCAAATGATTTTCCAAGATCCACAAGCCAGTCTTAATGCACGTAT
GAAAATCCGTGATATCGTTGCTGAAGGTCTTGATATTCACAAACTTGTTAATAGTAAAGAAGAACGTGATGAAAAAGTTC
AAGAATTGCTTTCTCTAGTAGGTTTGAACAAAGATCACATGACTCGTTACCCACACGAATTTTCTGGTGGTCAACGTCAA
CGTATTGGTATTGCACGTGCTCTTGCTGTACAACCAAAATTCATTATTGCTGATGAACCAATTTCTGCGCTTGACGTGTC
TATTCAAGCTCAAGTTGTTAATTTGATGCAAAAACTTCAACGCGAAAAAGGCTTAACTTACCTCTTCATCGCTCACGATT
TGTCAATGGTTAAATACATTTCAGATCGTATTGGAGTTATGCACTGGGGTAAAATGCTTGAAATTGGAACATCTGAAGAT
GTTTACAACAATCCAATTCACCCATATACTAAAAGTCTGTTGTCTGCAATTCCAGAACCAGATCCAGAATCTGAACGTGA
ACGTGTACACCAAGCTTATGATCCAAGTGCAGAACTTGATGGTCAAGAACGTGAAATGCGTGAAATCACACCAGGACATT
TTGTACTTTCTACAGAAGCAGAAGCAGAAGAATACAAAAAAGCATTATCATAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-267)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	55.7	99.032	0.552
amiF	Streptococcus thermophilus LMG 18311	55.375	99.032	0.548
amiF	Streptococcus salivarius strain HSISS4	55.049	99.032	0.545