Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   EL020_RS04540 Genome accession   NZ_LR134203
Coordinates   866852..867718 (+) Length   288 a.a.
NCBI ID   WP_058813771.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC11436     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 861852..872718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL020_RS04510 (NCTC11436_00937) - 862075..862950 (+) 876 WP_020916491.1 F0F1 ATP synthase subunit gamma -
  EL020_RS04515 (NCTC11436_00938) atpD 863018..864424 (+) 1407 WP_039697146.1 F0F1 ATP synthase subunit beta -
  EL020_RS04520 (NCTC11436_00939) - 864437..864853 (+) 417 WP_020916493.1 F0F1 ATP synthase subunit epsilon -
  EL020_RS04525 (NCTC11436_00940) - 864982..865218 (+) 237 WP_126402430.1 DUF1146 family protein -
  EL020_RS04530 (NCTC11436_00941) murA 865281..866555 (+) 1275 WP_043895004.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  EL020_RS04535 (NCTC11436_00942) - 866559..866747 (+) 189 WP_020916495.1 DNA-directed RNA polymerase subunit beta -
  EL020_RS04540 (NCTC11436_00943) endA 866852..867718 (+) 867 WP_058813771.1 DNA/RNA non-specific endonuclease Machinery gene
  EL020_RS04545 (NCTC11436_00944) pheS 868010..869053 (+) 1044 WP_014334511.1 phenylalanine--tRNA ligase subunit alpha -
  EL020_RS04550 (NCTC11436_00945) - 869086..869610 (+) 525 WP_126402431.1 GNAT family N-acetyltransferase -
  EL020_RS04555 (NCTC11436_00946) pheT 869680..872085 (+) 2406 WP_126402432.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 30987.36 Da        Isoelectric Point: 9.5053

>NTDB_id=1118966 EL020_RS04540 WP_058813771.1 866852..867718(+) (endA) [Streptococcus lutetiensis strain NCTC11436]
MVKKSKLSKQAKSFIFLLVLLLSIGAGWLTTSDSSNPVNQVISLITGESSVKIVSNQSSANQATPSQELADSVLTDSVKA
QLGSNLEWNGAGAYLVNGNKTDLNARVASKPYANNKTKIVQGQTVPTVANALLSKLTRQYRSREETGNGSTSWTPAGWHQ
AQNISGRYSHAVDRGHLLGYALVGGLKGFDASTSNPENVATQTAWANEASSEDSTGQNYYEGQVRRALDQNKRVRYRVTL
IYDGDNILASGTHLEAKSSDGSLEFNVFIPNVQSGLSFDYYSGKVSVN

Nucleotide


Download         Length: 867 bp        

>NTDB_id=1118966 EL020_RS04540 WP_058813771.1 866852..867718(+) (endA) [Streptococcus lutetiensis strain NCTC11436]
ATGGTAAAGAAATCAAAACTGTCTAAACAGGCAAAATCATTTATTTTTTTATTAGTTTTATTGCTTAGTATTGGTGCGGG
TTGGCTGACAACATCAGATTCAAGTAATCCTGTTAATCAAGTTATTTCCTTGATTACGGGAGAATCATCTGTAAAGATTG
TGTCAAATCAGTCATCTGCTAATCAAGCAACGCCAAGTCAAGAATTGGCAGATTCAGTCTTAACAGACAGCGTTAAAGCT
CAGCTTGGTTCAAACTTAGAATGGAACGGCGCGGGAGCTTATTTGGTTAACGGAAATAAAACCGATTTGAATGCAAGAGT
AGCCAGCAAACCTTATGCCAATAACAAAACAAAAATTGTGCAAGGTCAGACTGTTCCAACGGTCGCAAATGCTTTGTTGA
GTAAGTTGACACGTCAATACAGAAGCCGTGAGGAAACTGGAAATGGGTCAACCTCTTGGACGCCAGCTGGCTGGCATCAA
GCCCAAAATATCTCTGGAAGATATAGTCATGCTGTTGACCGTGGGCATTTGCTTGGCTATGCTTTAGTCGGCGGCTTAAA
AGGCTTTGATGCTTCAACAAGCAATCCTGAAAATGTAGCCACTCAGACAGCTTGGGCAAATGAAGCTAGTTCAGAAGACT
CAACGGGTCAGAATTACTACGAAGGTCAGGTCAGAAGAGCACTTGATCAGAATAAACGTGTTCGTTACCGAGTGACTTTG
ATTTATGATGGCGATAATATTCTTGCTAGCGGGACACATTTGGAAGCAAAATCATCTGACGGTAGTTTAGAGTTTAATGT
TTTCATTCCAAATGTCCAAAGTGGTTTAAGCTTTGATTATTATTCAGGTAAGGTTAGTGTGAATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(98-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

68.644

81.944

0.562
  endA Streptococcus pneumoniae D39

68.644

81.944

0.562
  endA Streptococcus pneumoniae R6

68.644

81.944

0.562
  endA Streptococcus pneumoniae TIGR4

68.644

81.944

0.562

Multiple sequence alignment