Detailed information NTG1118592

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: EL050_RS09290
• Genome accession: NZ_LR134165
• Coordinates: 1825684..1826463 (+)
• Length: 259 a.a.
• NCBI ID: WP_003181756.1
• Uniprot ID: A0A1Y0YKK2
• Organism: Bacillus paralicheniformis strain NCTC8721
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1820684..1831463

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL050_RS23060	-	1821018..1821305 (+)	288	WP_339326649.1	type I DNA topoisomerase	-
EL050_RS09270 (NCTC8721_01908)	trmFO	1821381..1822685 (+)	1305	WP_025811382.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
EL050_RS09275 (NCTC8721_01909)	xerC	1822752..1823666 (+)	915	WP_025811383.1	tyrosine recombinase XerC	-
EL050_RS09280 (NCTC8721_01910)	hslV	1823680..1824225 (+)	546	WP_020451384.1	ATP-dependent protease subunit HslV	-
EL050_RS09285 (NCTC8721_01911)	hslU	1824233..1825645 (+)	1413	WP_257007241.1	HslU--HslV peptidase ATPase subunit	-
EL050_RS09290 (NCTC8721_01912)	codY	1825684..1826463 (+)	780	WP_003181756.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
EL050_RS09295 (NCTC8721_01913)	flgB	1826815..1827204 (+)	390	WP_020451387.1	flagellar basal body rod protein FlgB	-
EL050_RS09300 (NCTC8721_01914)	flgC	1827204..1827656 (+)	453	WP_025811385.1	flagellar basal body rod protein FlgC	-
EL050_RS09305 (NCTC8721_01915)	fliE	1827670..1827987 (+)	318	WP_020451389.1	flagellar hook-basal body complex protein FliE	-
EL050_RS09310 (NCTC8721_01916)	fliF	1828038..1829639 (+)	1602	WP_020451390.1	flagellar basal-body MS-ring/collar protein FliF	-
EL050_RS09315 (NCTC8721_01917)	fliG	1829653..1830669 (+)	1017	WP_020451391.1	flagellar motor switch protein FliG	-
EL050_RS09320 (NCTC8721_01918)	fliH	1830653..1831420 (+)	768	WP_020451392.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29073.42 Da
• Isoelectric Point: 4.8196

>NTDB_id=1118592 EL050_RS09290 WP_003181756.1 1825684..1826463(+) (codY) [Bacillus paralicheniformis strain NCTC8721]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=1118592 EL050_RS09290 WP_003181756.1 1825684..1826463(+) (codY) [Bacillus paralicheniformis strain NCTC8721]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTTGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGACTATACAAAAAGCCTGTTC
AACATTCCGGAAACTTCATCCAACCTTGACATTAACAGCGAATATACGGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACAGTCGTTCCGATCATCGGAGGGGGCGAAAGACTCGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCTGAATATGGCGCAACGGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCTGAA
GAGATCGAAGAGGAAGCACGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCATTATCTTACAGTGAGCTTGAAGCAAT
TGAACATATTTTTGAAGAGCTTGACGGAAATGAAGGTCTGCTTGTCGCAAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAATGCGCTGCGCAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCATTAGGGATGAAAGGCACA
TACATTAAAGTCCTGAACAACAAATTTTTAATGGAATTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: A0A1Y0YKK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	94.595	100	0.946
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467