Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   ELZ51_RS04190 Genome accession   NZ_LR134094
Coordinates   790760..791626 (+) Length   288 a.a.
NCBI ID   WP_126426280.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 785760..796626
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ51_RS04165 (NCTC4669_00876) atpD 786796..788202 (+) 1407 WP_003050137.1 F0F1 ATP synthase subunit beta -
  ELZ51_RS04170 (NCTC4669_00877) - 788215..788631 (+) 417 WP_126426276.1 F0F1 ATP synthase subunit epsilon -
  ELZ51_RS04175 (NCTC4669_00878) - 788960..789196 (+) 237 WP_277997757.1 DUF1146 family protein -
  ELZ51_RS04180 (NCTC4669_00879) murA 789261..790532 (+) 1272 WP_003050140.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ELZ51_RS04185 (NCTC4669_00880) - 790536..790724 (+) 189 WP_126426278.1 DNA-directed RNA polymerase subunit beta -
  ELZ51_RS04190 (NCTC4669_00881) endA 790760..791626 (+) 867 WP_126426280.1 DNA/RNA non-specific endonuclease Machinery gene
  ELZ51_RS04195 (NCTC4669_00883) pheS 791909..792952 (+) 1044 WP_115245761.1 phenylalanine--tRNA ligase subunit alpha -
  ELZ51_RS04200 (NCTC4669_00884) pheT 793162..795567 (+) 2406 WP_003050144.1 phenylalanine--tRNA ligase subunit beta -
  ELZ51_RS04205 (NCTC4669_00885) - 795680..796057 (+) 378 WP_003050145.1 OsmC family protein -
  ELZ51_RS04210 (NCTC4669_00886) - 796050..796436 (+) 387 WP_126426282.1 YbgA family protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31903.99 Da        Isoelectric Point: 10.0966

>NTDB_id=1118280 ELZ51_RS04190 WP_126426280.1 790760..791626(+) (endA) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
MLIRKKQKRVLNSFLLILLVLGSSYLAKSDFIASNHPIKQIYRTVLGDKGESSSESKEVHSEVPTEALSASVLTKSIKEQ
LASDIEWNGAGAYIINRNKTDLTASVASLPYANNETKWVQGQKVPTRANALLTKSTRQYRNRYQTDNAYRTFKPAGWHQL
HHLKGNYDHAVDRGHLLGYALVGGLKGFDASTSNPDNIATQLSWANQADKPYSTGQNYYEGLVRRALDKGKRVRYRVTLL
YDGDNLLASGSQLEAKSADGSLAFNVFVPNVQAGLTVDYRKGQIAINP

Nucleotide


Download         Length: 867 bp        

>NTDB_id=1118280 ELZ51_RS04190 WP_126426280.1 790760..791626(+) (endA) [Streptococcus dysgalactiae subsp. dysgalactiae strain NCTC4669]
ATGTTAATAAGGAAAAAACAAAAAAGGGTGCTTAATTCCTTCTTATTGATTTTGTTAGTGTTGGGGTCTAGTTACCTTGC
TAAGAGTGATTTCATAGCTAGCAATCACCCTATTAAGCAAATTTATCGTACCGTTTTGGGAGATAAGGGTGAATCATCAT
CAGAATCAAAAGAAGTCCATAGTGAGGTTCCCACAGAAGCCCTATCCGCTTCTGTCTTAACCAAATCCATTAAGGAACAA
TTAGCTTCCGATATTGAATGGAATGGAGCAGGCGCCTATATTATCAACAGGAACAAAACAGATTTAACCGCAAGCGTAGC
CAGTCTGCCCTATGCCAATAATGAAACCAAATGGGTCCAAGGACAAAAGGTTCCTACTAGAGCTAATGCCTTACTTACTA
AGTCGACACGACAGTATCGGAATCGCTATCAAACGGACAATGCTTATCGTACCTTCAAGCCTGCTGGTTGGCACCAATTA
CATCACTTAAAAGGAAATTATGATCATGCAGTTGATAGAGGACATTTGCTAGGTTATGCTTTAGTTGGTGGACTGAAAGG
TTTTGATGCTTCTACCAGTAATCCTGATAATATTGCCACTCAACTAAGTTGGGCCAATCAAGCAGATAAACCCTATTCGA
CAGGTCAAAATTACTATGAAGGCTTAGTACGTCGTGCATTGGATAAGGGTAAAAGGGTCCGTTATCGTGTTACCTTGCTT
TATGATGGTGATAATCTCTTAGCCAGTGGTAGCCAGTTAGAGGCCAAATCTGCCGATGGGAGTTTAGCATTTAACGTGTT
TGTTCCAAATGTCCAAGCAGGGCTGACGGTTGATTATCGAAAAGGACAGATTGCCATCAATCCCTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(122-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

61.905

80.208

0.497
  endA Streptococcus pneumoniae D39

61.905

80.208

0.497
  endA Streptococcus pneumoniae R6

61.905

80.208

0.497
  endA Streptococcus pneumoniae TIGR4

61.905

80.208

0.497

Multiple sequence alignment