Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EQB41_RS12490 Genome accession   NZ_LR129840
Coordinates   1839229..1840260 (-) Length   343 a.a.
NCBI ID   WP_000506424.1    Uniprot ID   A0A0B7LYB2
Organism   Streptococcus pneumoniae strain 4496 isolate 4496     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1834229..1845260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQB41_RS09880 - 1834308..1835069 (-) 762 WP_001107757.1 SDR family oxidoreductase -
  EQB41_RS09885 ytpR 1835102..1835728 (-) 627 WP_050203507.1 YtpR family tRNA-binding protein -
  EQB41_RS09890 - 1835744..1836076 (-) 333 WP_127820849.1 thioredoxin family protein -
  EQB41_RS09895 - 1836073..1836372 (-) 300 WP_001818001.1 DUF4651 domain-containing protein -
  EQB41_RS12670 - 1836466..1836597 (+) 132 WP_001811306.1 hypothetical protein -
  EQB41_RS09900 - 1836622..1836819 (-) 198 Protein_1860 N-acetylmuramoyl-L-alanine amidase family protein -
  EQB41_RS09905 - 1837061..1837735 (-) 675 WP_000725750.1 LiaF transmembrane domain-containing protein -
  EQB41_RS09910 - 1837741..1838187 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  EQB41_RS09915 - 1838301..1838804 (-) 504 WP_127820850.1 phosphatase PAP2 family protein -
  EQB41_RS09920 - 1838801..1839163 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  EQB41_RS12490 rcrQ 1839229..1840260 (-) 1032 WP_000506424.1 ABC transporter ATP-binding protein Regulator
  EQB41_RS12495 rcrP 1840267..1841088 (-) 822 WP_232019721.1 ABC transporter permease Regulator
  EQB41_RS09930 - 1841105..1841576 (-) 472 Protein_1867 MarR family winged helix-turn-helix transcriptional regulator -
  EQB41_RS09940 - 1841700..1842416 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  EQB41_RS09950 ply 1843299..1844708 (-) 1410 WP_127820851.1 cholesterol-dependent cytolysin pneumolysin -
  EQB41_RS09955 - 1844719..1845129 (-) 411 WP_000595762.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37918.12 Da        Isoelectric Point: 4.4764

>NTDB_id=1116243 EQB41_RS12490 WP_000506424.1 1839229..1840260(-) (rcrQ) [Streptococcus pneumoniae strain 4496 isolate 4496]
MGFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGTGKTTIVNLLMKFYEIDKGSIHI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=1116243 EQB41_RS12490 WP_000506424.1 1839229..1840260(-) (rcrQ) [Streptococcus pneumoniae strain 4496 isolate 4496]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGCCGACTGGGACTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCACATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(120-265)

ABC transporter (ABC_tran)

(68-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7LYB2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.804

65.306

0.528
  rcrP Streptococcus mutans UA159

37.861

100

0.382

Multiple sequence alignment