Detailed information NTG1115833

Bioinformatically predicted

Overview

• Name: comGB
• Type: Machinery gene
• Locus tag: E0E15_RS08265
• Genome accession: NZ_LR027870
• Coordinates: 1634140..1635231 (-)
• Length: 363 a.a.
• NCBI ID: WP_130827171.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain BPH2019 isolate BPH2019
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1632984..1634156	1634140..1635231	flank	-16

Gene organization within MGE regions

Location: 1632984..1635231

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E0E15_RS08260	-	1632984..1634156 (+)	1173	WP_000195429.1	IS256-like element IS256 family transposase	-
E0E15_RS08265	comGB	1634140..1635231 (-)	1092	WP_130827171.1	competence type IV pilus assembly protein ComGB	Machinery gene

Sequence

Protein

• Length: 363 a.a.
• Molecular weight: 42201.64 Da
• Isoelectric Point: 10.0088

>NTDB_id=1115833 E0E15_RS08265 WP_130827171.1 1634140..1635231(-) (comGB) [Staphylococcus aureus strain BPH2019 isolate BPH2019]
MKLQCINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKILSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVKSRLLCKMLYNVFTISTYQN

Nucleotide

• Length: 1092 bp

>NTDB_id=1115833 E0E15_RS08265 WP_130827171.1 1634140..1635231(-) (comGB) [Staphylococcus aureus strain BPH2019 isolate BPH2019]
GTGAAACTACAATGCATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGACTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAATATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTCAAGTCCAGACT
CCTGTGTAAAATGCTATACAATGTTTTTACCATTTCTACTTATCAAAATTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (27-146)

• Type II secretion system (T2SS), protein F (T2SSF) (227-343)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comGB	Staphylococcus aureus MW2	99.417	94.49	0.939
comGB	Staphylococcus aureus N315	99.417	94.49	0.939