Detailed information NTG1115436

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: BAMMD1_RS11830
• Genome accession: NZ_LN999829
• Coordinates: 2538823..2541201 (-)
• Length: 792 a.a.
• NCBI ID: WP_060387073.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain B25
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2533823..2546201

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAMMD1_RS11800 (BAMMD1_2383)	-	2534895..2535623 (+)	729	WP_003152746.1	amino acid ABC transporter ATP-binding protein	-
BAMMD1_RS11805 (BAMMD1_2384)	-	2535644..2536471 (+)	828	WP_003152745.1	transporter substrate-binding domain-containing protein	-
BAMMD1_RS11810 (BAMMD1_2385)	-	2536528..2537178 (+)	651	WP_003152744.1	amino acid ABC transporter permease	-
BAMMD1_RS11815 (BAMMD1_2386)	-	2537197..2537853 (+)	657	WP_014305490.1	amino acid ABC transporter permease	-
BAMMD1_RS18890	-	2537889..2538020 (-)	132	WP_003152741.1	YrzQ family protein	-
BAMMD1_RS11820 (BAMMD1_2387)	-	2538042..2538233 (-)	192	WP_003152738.1	hypothetical protein	-
BAMMD1_RS11825 (BAMMD1_2388)	-	2538246..2538704 (-)	459	WP_003152735.1	PRC-barrel domain-containing protein	-
BAMMD1_RS11830 (BAMMD1_2389)	recD2	2538823..2541201 (-)	2379	WP_060387073.1	ATP-dependent RecD-like DNA helicase	Machinery gene
BAMMD1_RS11835 (BAMMD1_2390)	-	2541220..2541840 (-)	621	WP_088005508.1	tetratricopeptide repeat protein	-
BAMMD1_RS11840 (BAMMD1_2391)	mnmA	2541928..2543043 (-)	1116	WP_014305492.1	tRNA 2-thiouridine(34) synthase MnmA	-
BAMMD1_RS11845 (BAMMD1_2392)	-	2543080..2544219 (-)	1140	WP_003152731.1	cysteine desulfurase family protein	-
BAMMD1_RS11850 (BAMMD1_2393)	cymR	2544238..2544654 (-)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
BAMMD1_RS11855 (BAMMD1_2394)	-	2544849..2546117 (+)	1269	WP_044053489.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 792 a.a.
• Molecular weight: 88247.92 Da
• Isoelectric Point: 4.9836

>NTDB_id=1115436 BAMMD1_RS11830 WP_060387073.1 2538823..2541201(-) (recD2) [Bacillus velezensis strain B25]
MDQLNIEEQPYVKGVIHTVIYHNDTNLYTVLKVKVAETSEAIEDKVVSVTGYFPLLQEDETYTFYGKTATHPKFGLQFQA
EHFKKEIPTTKEGIIHYLSSDLFEGIGKKTAEEIVKKLGDGALNKILADASVLYDVPKMSKKKADKLAGELQRHQGLEQI
MISLNQYGFGPQLSMKIYQAYETETLEKIQENPYQLVKDVEGIGFVKADELGGKMGLSGNHPERIKAAILYTIESTCLSG
GHTYIETKQLIVNTQTLLNQSAEGGRVTEMDAADGIIALGESKDIVIEGERCYFPSLFYAEQNVAKRVLDIAAQTEYADQ
FPESEFLLALGELEERMNVQYAPSQKDAIQKALSSPMLLLTGGPGTGKTTVIKGIVELYSELHGVSLDPGDYKKDEAFPV
LLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTYNEDQPIEGKLIIIDEASMLDIWLASHLFKALPKHIQLIVVGD
EDQLPSVGPGQVLRDLLASEVLPTVRLTDIYRQAEGSSIVELAHDMKKGLLPKGLTAPTKDRSFIRCNSSQIKEVVDQVV
SNALKKGYTSRDIQVLAPMYRGKAGINELNMLLQDIMNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEIV
SIFYAKENTEKEDMVVVSFDGNEITFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKF
LILCGEEEALEWGVKNNDATVRQTSLKNRLTEQTEEMDAELAALQKELPFSVYDANIGMEGITPFDFMEEKA

Nucleotide

• Length: 2379 bp

>NTDB_id=1115436 BAMMD1_RS11830 WP_060387073.1 2538823..2541201(-) (recD2) [Bacillus velezensis strain B25]
GTGGATCAGCTGAACATCGAAGAACAGCCGTATGTAAAAGGCGTCATTCATACGGTCATTTATCATAATGACACCAACCT
GTATACAGTGCTGAAAGTCAAGGTTGCAGAAACGTCTGAGGCGATCGAAGACAAGGTCGTATCCGTAACGGGCTACTTCC
CTCTGCTGCAAGAAGATGAGACCTACACATTTTACGGAAAAACTGCCACGCATCCTAAGTTCGGCCTGCAATTTCAGGCT
GAACACTTTAAAAAAGAAATTCCGACCACAAAAGAAGGAATCATTCACTATTTATCAAGTGATCTGTTTGAAGGAATCGG
AAAAAAAACGGCGGAAGAAATCGTCAAAAAGCTTGGAGACGGCGCGCTCAATAAAATTCTGGCTGATGCATCGGTGCTTT
ATGATGTGCCGAAAATGTCGAAAAAGAAAGCGGATAAGCTTGCCGGAGAGCTGCAGCGGCATCAGGGTCTTGAGCAGATT
ATGATCTCTCTGAACCAATACGGTTTCGGGCCCCAGCTATCCATGAAAATATATCAGGCCTACGAAACGGAAACCTTGGA
GAAAATTCAGGAAAATCCTTATCAGCTTGTAAAAGACGTTGAGGGCATCGGCTTTGTGAAAGCTGACGAGCTGGGCGGAA
AAATGGGTCTGTCAGGAAACCACCCGGAGCGGATCAAAGCGGCTATCTTATATACGATTGAATCGACATGTCTTTCAGGG
GGCCACACGTACATAGAAACGAAGCAGCTGATTGTCAATACGCAAACGCTTCTGAATCAGTCAGCTGAAGGCGGCCGCGT
CACGGAAATGGATGCGGCTGACGGCATCATCGCCCTCGGGGAGAGTAAGGATATCGTCATCGAAGGAGAGCGCTGCTATT
TTCCGTCCTTGTTTTACGCGGAACAAAACGTCGCAAAACGCGTGCTCGACATTGCGGCTCAGACGGAGTATGCCGATCAA
TTTCCTGAATCGGAATTTCTGCTTGCACTCGGTGAACTGGAAGAACGGATGAATGTTCAATACGCACCAAGCCAAAAGGA
TGCCATTCAAAAAGCGCTGTCTTCACCGATGCTTTTACTGACCGGGGGACCTGGAACGGGGAAAACGACCGTTATTAAAG
GAATCGTGGAATTATACAGTGAACTGCACGGCGTATCCCTTGACCCCGGTGATTATAAAAAAGACGAGGCGTTTCCGGTG
CTGCTTGCCGCGCCGACCGGAAGAGCCGCAAAACGGATGAGTGAATCTACGGGTCTGCCGGCTGTTACGATTCACAGGCT
GCTCGGCTGGAATGGCGCTGAAGGCTTTACCTACAACGAAGATCAGCCGATTGAAGGGAAACTGATCATTATAGACGAAG
CGAGTATGCTCGATATCTGGCTCGCCAGCCATTTGTTTAAGGCGCTTCCTAAGCACATTCAGCTCATTGTTGTCGGTGAT
GAAGACCAGCTTCCTTCAGTAGGACCGGGGCAGGTGCTCAGAGATCTTTTGGCTTCTGAAGTGCTGCCGACCGTGCGCCT
GACAGATATTTACCGTCAGGCTGAAGGATCATCCATTGTGGAACTTGCCCATGATATGAAAAAAGGGCTGCTTCCAAAGG
GGCTGACCGCGCCGACAAAGGACCGCTCATTTATCCGCTGTAATTCTTCACAGATTAAAGAAGTCGTGGATCAGGTCGTC
TCGAACGCGTTAAAAAAGGGGTATACCTCCAGAGATATTCAAGTGCTTGCCCCGATGTACAGGGGAAAAGCGGGAATTAA
CGAGCTGAACATGCTTCTTCAGGACATCATGAATCCGCCTAAAGAAAAAAGGCGGGAGCTGAAATTCGGAGATGTCGTCT
ACAGGACGGGCGATAAAATATTGCAGCTTGTCAACCAGCCGGAAAACAATGTGTTTAACGGCGATATCGGCGAAATCGTG
TCCATTTTTTATGCCAAAGAAAATACGGAAAAAGAAGACATGGTCGTCGTCTCGTTTGACGGCAACGAAATCACCTTTAC
GAAAAAGGATTTCAGCCAGTTTACCCACGCTTACTGCTGTTCCATTCATAAGTCGCAGGGGAGCGAATTCCCGATTGTCG
TCCTGCCTGTCGTCAAAGGCTACTATCGAATGCTCAGGAGAAATCTGCTTTATACCGCCATTACAAGAGCGAAAAAATTT
CTGATTCTTTGCGGAGAAGAAGAAGCGCTTGAATGGGGCGTCAAAAACAATGATGCCACCGTCAGACAGACGTCGCTTAA
AAACAGGCTCACAGAGCAGACTGAAGAGATGGATGCAGAACTGGCCGCCCTGCAAAAAGAGCTGCCGTTCAGTGTATATG
ATGCGAACATCGGAATGGAAGGCATCACGCCTTTTGACTTTATGGAAGAAAAAGCGTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (341-548)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-659)

• Helix-hairpin-helix containing domain (HHH_RecD2) (154-244)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (676-724)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	88.748	99.874	0.886