Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABR2091_RS16835 Genome accession   NZ_LN997846
Coordinates   3605426..3606067 (-) Length   213 a.a.
NCBI ID   WP_000201227.1    Uniprot ID   A0A009HSE6
Organism   Acinetobacter baumannii isolate R2091     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3600426..3611067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABR2091_RS16815 (ABR2091_3388) aroK 3601342..3601911 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ABR2091_RS16820 (ABR2091_3389) pilQ 3601923..3604088 (-) 2166 WP_058207807.1 type IV pilus secretin PilQ family protein Machinery gene
  ABR2091_RS16825 (ABR2091_3390) pilP 3604151..3604678 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ABR2091_RS16830 (ABR2091_3391) pilO 3604689..3605429 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABR2091_RS16835 (ABR2091_3392) pilN 3605426..3606067 (-) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  ABR2091_RS16840 (ABR2091_3393) pilM 3606067..3607125 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  ABR2091_RS16845 (ABR2091_3394) ponA 3607288..3609843 (+) 2556 WP_031965526.1 penicillin-binding protein PBP1a -
  ABR2091_RS16850 (ABR2091_3395) - 3609861..3610685 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  ABR2091_RS16855 (ABR2091_3396) - 3610688..3611020 (-) 333 WP_031965525.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24019.35 Da        Isoelectric Point: 5.3968

>NTDB_id=1115372 ABR2091_RS16835 WP_000201227.1 3605426..3606067(-) (pilN) [Acinetobacter baumannii isolate R2091]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1115372 ABR2091_RS16835 WP_000201227.1 3605426..3606067(-) (pilN) [Acinetobacter baumannii isolate R2091]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009HSE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

100

100

1
  comN Acinetobacter baylyi ADP1

71.905

98.592

0.709

Multiple sequence alignment