Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SD1D_RS09635 Genome accession   NZ_LN879430
Coordinates   2084504..2086342 (+) Length   612 a.a.
NCBI ID   WP_058258715.1    Uniprot ID   A0A0K8J807
Organism   Herbinix luporum strain SD1D     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2079504..2091342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SD1D_RS09625 (SD1D_1933) - 2080960..2082090 (+) 1131 WP_058258713.1 histidinol-phosphate transaminase -
  SD1D_RS09630 (SD1D_1934) - 2082295..2084511 (+) 2217 WP_058258714.1 ABC transporter ATP-binding protein -
  SD1D_RS09635 (SD1D_1935) rcrQ 2084504..2086342 (+) 1839 WP_058258715.1 ABC transporter ATP-binding protein Regulator
  SD1D_RS09640 (SD1D_1936) - 2086423..2086677 (+) 255 WP_058258716.1 DUF2164 domain-containing protein -
  SD1D_RS09645 (SD1D_1937) putP 2086769..2088331 (-) 1563 WP_058258717.1 sodium/proline symporter PutP -
  SD1D_RS09650 (SD1D_1938) - 2088530..2089063 (-) 534 WP_058258718.1 deoxyuridine 5'-triphosphate nucleotidohydrolase -
  SD1D_RS09655 (SD1D_1939) - 2089072..2089965 (-) 894 WP_058258719.1 LysR family transcriptional regulator -
  SD1D_RS09660 (SD1D_1940) - 2090230..2090856 (+) 627 WP_058258720.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 68211.18 Da        Isoelectric Point: 8.7295

>NTDB_id=1114987 SD1D_RS09635 WP_058258715.1 2084504..2086342(+) (rcrQ) [Herbinix luporum strain SD1D]
MNKNDKKPKMGGPRHGMGAPVEKAKDFKGTMKKLLAYLAGYKWALLIVFLFAIGSTIFSIIGPTILGDAITEIVNGFIDK
ISGGKGINFNALGKILLLLIGLYGISSLFSFIQGWITTEIAQRVSYKFRKSISEKIHRMPMGYFDSMTHGEILSRVTNDV
DTLSQSLNQSLTQLITSVVSIVGIFIMMIRISVPMTLLALLTIPISLGIMGAVVKKSQKHFQKQQEYLGHVNGLVEEVYG
GHNIVKAFNKEEDFIKDFGKKNETLYESAWKSQFLSGLMHPIMQFVGNLGYVGVAILGGYLTINGRIQIGQIQTFFQYIR
NFTHPITQLAQVANMFQSTAAASERVFEFLEAAEEVADTDTPLSIEGLKGNIEFKHVNFGYNSDKTIIHDFNAKIYDGQK
VAIVGPTGAGKTTIVKLLMRFYDINSGDILIDGHNIKDFERSQLRRMFGMVLQDTWLYNGTIMDNIRYSKLDATDEEVIK
AAKAAHVHHFIMTLPDGYNMVLNEESTNISQGQKQLLTIARAILADPKILILDEATSSVDTRTEILIQKAMDNLMKGRTS
FIIAHRLSTIRDADIILVMKDGDIIEQGNHEELLAKGGFYAKLYNSQFEQIA

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=1114987 SD1D_RS09635 WP_058258715.1 2084504..2086342(+) (rcrQ) [Herbinix luporum strain SD1D]
ATGAATAAAAATGATAAAAAACCTAAAATGGGTGGCCCCCGTCATGGTATGGGAGCTCCTGTGGAAAAAGCTAAGGATTT
TAAGGGAACCATGAAAAAGCTCTTAGCATATCTAGCCGGCTATAAATGGGCATTGTTAATAGTCTTTTTATTTGCCATCG
GCAGCACCATATTTTCCATCATAGGACCTACAATCCTAGGTGATGCAATTACTGAAATCGTAAATGGCTTTATAGATAAA
ATCAGTGGTGGAAAAGGAATTAACTTTAATGCCTTAGGAAAAATACTACTTCTACTAATAGGCCTTTATGGTATTTCCTC
CTTGTTTTCATTTATTCAAGGATGGATTACAACTGAAATAGCTCAAAGGGTATCTTATAAATTTAGAAAGAGTATTTCTG
AAAAAATCCATCGTATGCCTATGGGATATTTTGATTCTATGACTCACGGTGAAATACTTTCTAGGGTAACTAATGATGTA
GATACCTTAAGCCAAAGCTTAAATCAGAGTCTTACCCAGCTGATAACTTCAGTAGTAAGCATTGTAGGTATCTTTATAAT
GATGATTAGAATAAGTGTCCCCATGACTCTCCTTGCACTGCTTACAATCCCCATATCCTTGGGAATTATGGGAGCAGTTG
TTAAGAAATCTCAGAAGCATTTCCAAAAGCAGCAAGAATATTTAGGTCATGTTAACGGTTTAGTGGAAGAGGTATATGGG
GGTCACAATATAGTTAAGGCTTTTAATAAGGAAGAAGACTTTATAAAAGATTTTGGCAAGAAGAATGAAACCCTTTATGA
ATCTGCCTGGAAGTCTCAGTTTTTATCGGGACTTATGCACCCTATTATGCAGTTTGTAGGTAATCTAGGTTATGTAGGTG
TTGCCATTCTTGGTGGTTATCTTACAATAAACGGACGGATACAAATAGGTCAAATTCAAACTTTCTTCCAATATATAAGA
AATTTTACTCATCCGATTACTCAACTGGCACAGGTGGCCAATATGTTCCAGTCAACGGCAGCAGCCTCAGAAAGGGTATT
TGAATTTTTAGAAGCTGCTGAGGAAGTAGCTGATACTGATACTCCTCTTTCCATAGAAGGTCTTAAGGGCAATATTGAAT
TTAAGCATGTAAACTTCGGATATAACAGTGACAAAACTATCATACATGACTTTAATGCAAAAATATATGATGGTCAAAAA
GTAGCCATCGTAGGTCCTACCGGAGCAGGAAAAACTACAATAGTTAAACTACTTATGCGTTTCTATGATATTAATAGCGG
TGATATACTTATTGACGGCCATAATATTAAAGATTTTGAAAGAAGTCAGTTAAGACGAATGTTCGGTATGGTTTTACAGG
ATACTTGGCTTTATAACGGTACTATAATGGATAATATCAGATACAGCAAACTTGATGCTACAGATGAAGAGGTAATAAAA
GCTGCTAAGGCTGCCCATGTTCATCATTTTATTATGACTTTACCGGATGGATATAATATGGTCCTTAACGAAGAAAGTAC
AAATATATCCCAGGGGCAAAAACAGCTACTTACAATTGCCAGAGCCATCTTAGCAGATCCAAAAATCTTGATTTTAGATG
AAGCCACCAGCTCCGTTGATACCAGAACAGAAATCCTAATTCAAAAGGCCATGGATAACCTAATGAAAGGAAGAACCAGC
TTTATCATAGCCCATAGATTATCAACCATAAGGGATGCTGATATAATTCTTGTTATGAAAGACGGAGATATTATAGAACA
GGGTAATCATGAGGAACTGCTTGCCAAAGGCGGTTTCTATGCTAAACTTTATAACTCACAATTTGAACAAATTGCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(45-322)

ABC transporter (ABC_tran)

(389-537)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K8J807

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.256

95.915

0.482

Multiple sequence alignment